P. C. Whitford

The paper describes a framework using targeted phage display to identify conserved epitopes on the SARS-CoV-2 Spike protein for universal vaccine development.

This paper introduces SMOG 2 and OpenSMOG, extending structure-based models to handle large biomolecular systems with enhanced customization and integration with OpenMM.

The paper presents a model to quantify the impact of diffuse ions on RNP assembly dynamics, showing their role in controlling tRNA movement during translation.

The paper simulates subunit rotation in a yeast ribosome to study the energetics of large-scale rearrangements and identifies key inter-subunit interactions influencing the free-energy barrier.

This paper designs and evaluates phage-based and AAVP-based vaccination strategies for SARS-CoV-2 that induce systemic antibody responses in mice, with potential for a cold-free supply chain.

This study evaluates experimentally-accessible measures to identify the free-energy barrier and transition state ensemble in ribosome subunit rotation using simulated rotation events.