P. D. Keightley

The paper estimates mutation, recombination, and transposition rates in Drosophila melanogaster and D. simulans populations, finding variation between species, populations, and sexes.

This study estimates the rate and spectrum of structural mutations in two strains of Chlamydomonas reinhardtii using long-read sequencing, revealing strain-specific variation and associations with transposable elements.

The paper discusses challenges in population genomics due to data abundance and highlights best practices for statistical inference and model fitting.

The paper infers the distribution of fitness effects of mutations in Chlamydomonas reinhardtii by analyzing frequency changes under experimental evolution and finds a leptokurtic distribution with equal positive and negative effects.

This study estimates the effects of positive selection on protein-coding and regulatory mutations in wild mice, finding stronger fitness impacts from coding mutations but higher frequency in regulatory regions.

The paper identifies cis-regulatory variants affecting gene expression plasticity in three Arabidopsis species under dehydration stress, showing lineage-specific selective pressures on regulatory changes.

The paper infers the distribution of fitness effects of spontaneous mutations in Chlamydomonas reinhardtii using a Bayesian mixture model and mutation accumulation experiments.

The paper investigates how selection at linked sites affects nucleotide diversity in the house mouse genome using simulations and site frequency spectrum analysis.

The paper develops a method to accurately infer ancestral and derived allele probabilities at polymorphic sites, correcting biases in parsimony-based approaches.

This study constructs a recombination map for M. m. castaneus and finds conservation of recombination rate variation with M. m. domesticus, along with a positive correlation between recombination rate and genetic diversity.