Author

S. Amini

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 3 Plant Biology· 2 Biophysics· 1 Cancer Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 7 Research Focus:cell type annotation· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Assay:imaging· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1

Frequent Co-Authors

A. Cipitria· 2 shared B. Arsova· 2 shared B. Bosman· 2 shared C. A. Garrido· 2 shared D. S. Garske· 2 shared G. N. Duda· 2 shared K. Schmidt-Bleek· 2 shared M. Carnol· 2 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBioengineering

A. Cipitria

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Author profile →

8 papers

Recent·Most cited

Anisotropic Hydrogel Degradation Enhances 3D Collective Mesenchymal Stromal Cell Alignment, Mechanotransduction and Osteogenic Differentiation

C. A. Garrido, D. S. Garske, C. H. Bucher, S. Amini, G. N. Duda, K. Schmidt-Bleek, A. Cipitria

This paper shows that anisotropic hydrogel degradation patterns enhance hMSC alignment, mechanotransduction, and osteogenic differentiation compared to uniform materials.

bioRxiv · Apr 11, 2024Bioengineering

Empowering human-like walking with a bio-inspired gait controller for an under-actuated torque- driven human model

S. Amini, I. Kardan, A. Seth, A. Akbarzadeh

This paper proposes a bio-inspired gait controller for a torque-driven human model to achieve stable walking with minimal energy expenditure and robustness to disturbances.

bioRxiv · Dec 10, 2023Bioengineering

Hydrogels with stiffness-degradation spatial patterns control anisotropic 3D cell response

C. A. Garrido, D. S. Garske, M. Thiele, S. Amini, S. Real, G. N. Duda, K. Schmidt-Bleek, A. Cipitria

This study develops hydrogels with spatial stiffness-degradation patterns to control anisotropic 3D cell response, showing changes in cell morphology and proliferation over time.

bioRxiv · Jan 25, 2023Bioengineering

Calcitic prisms of the giant seashell Pinna nobilis form light guide arrays

S. Amini, T. Zhu, A. Biswas, M. A. Charsooghi, K. Kim, S. Reber, Y. Dauphin, P. Fratzl

This study shows that the prismatic layer of Pinna nobilis shells functions as light guides, enhancing optical resolution and contrast for tracking movement.

bioRxiv · Oct 25, 2022 · PreprintBiophysics

Transcriptional regulation of ZIP genes is independent of local zinc status in Brachypodium shoots upon zinc deficiency and resupply

S. Amini, B. Arsova, S. Gobert, M. Carnol, B. Bosman, P. Motte, M. Watt, M. Hanikenne

The paper investigates zinc homeostasis in Brachypodium by analyzing gene expression and ionomic changes under zinc deficiency and resupply, identifying root-to-shoot signaling mechanisms.

bioRxiv · Nov 23, 2020Plant Biology

A comprehensive map of genetic interactions in childhood cancer reveals multiple underlying biological mechanisms

J. T. Daub, S. Amini, D. J. E. Kersjes, X. Ma, N. Jäger, J. Zang, S. M. Pfister, F. C. P. Holstege, P. Kemmeren

The paper identifies genetic interactions in childhood cancers using a statistical pipeline, revealing 15 co-occurring and 27 mutually exclusive gene pairs, with most mechanisms linked to tumor subtypes or pathways.

bioRxiv · Nov 17, 2020Cancer Biology

Drug susceptibility testing of Mycobacterium simiae: An emerging pathogen in Iran

M. J. Nasiri, S. Amini, Z. Nikpor, S. Arefzadeh, S. M. J. Mousavi

This study tests drug susceptibility of Mycobacterium simiae isolates from Iran, finding multidrug resistance and distinct patterns compared to prior studies.

bioRxiv · Sep 17, 2019 · PreprintMicrobiology

Resolution of the proteome, transcript and ionome dynamics upon Zn re-supply in Zn-deficient Arabidopsis

B. Arsova, S. Amini, M. Scheepers, D. Baiwir, G. Mazzucchelli, M. Carnol, B. Bosman, P. Motte, E. de Pauw, M. Watt, M. Hanikenne

This study examines the dynamic changes in proteome, transcriptome, and ionome of Zn-deficient Arabidopsis after Zn re-supply, revealing rapid Zn uptake and regulatory responses.

bioRxiv · Apr 5, 2019 · PreprintPlant Biology