Author

V. Uhlmann

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Cell Biology· 1 Immunology· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 4 Research Focus:cell type annotation· 3 Organism:human· 3 Assay:imaging· 3 Approach:statistical model· 3 Research Focus:clustering· 2 Research Focus:spatial domain detection· 2 Assay:spatial transcriptomics· 2

Frequent Co-Authors

A. Aivazidis· 1 shared A. Akinbote· 1 shared A. Brazma· 1 shared A. Filby· 1 shared A. Huseynov· 1 shared A. J. Fisher· 1 shared A. J. Radtke· 1 shared A. M. A. Miranda· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperPathology

A. Aivazidis

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Author profile →

4 papers

Recent·Most cited

Label-free phenotyping of human microvessel networks

L. Rappez, A. Akinbote, M. Cherubini, V. Uhlmann, K. Haase

This paper introduces VascuMap, a deep-learning tool for label-free microvessel segmentation and spatial analysis, achieving high accuracy and enabling comprehensive examination of vascular networks.

bioRxiv · Feb 20, 2024 · PreprintBioengineering

Integrated histopathology, spatial and single cell transcriptomics resolve cellular drivers of early and late alveolar damage in COVID-19

J. T. H. Lee, S. N. Barnett, K. Roberts, H. Ashwin, L. Milross, J.-W. Cho, A. Huseynov, B. Woodhams, A. Aivazidis, T. Li, J. Majo, P. C. Guerrero, M. Lee, A. M. A. Miranda, Z. Jablonska, , O. A. Bayraktar

This study integrates single-cell and spatial transcriptomics with histopathology to identify cellular and molecular changes in lung alveolar damage during COVID-19 progression.

bioRxiv · Dec 20, 2023Pathology

A spatial human thymus cell atlas mapped to a continuous tissue axis

N. Yayon, V. R. Kedlian, L. Boehme, C. Suo, B. Wachter, R. T. Beuschel, O. Amsalem, K. Polanski, S. Koplev, E. Tuck, E. Dann, J. Van Hulle, S. Perera, T. Putteman, A. V. Predeus, , Tag

The paper maps the spatial organization of the human thymus across developmental stages using a multimodal atlas and identifies key cellular and molecular features of T cell development.

bioRxiv · Oct 25, 2023Immunology

LOMAR: LOcalization Microscopy Analysis in R

M. Theiss, A. Brazma, V. Uhlmann, J.-K. Heriche

LOMAR is a software package for comparing SMLM point sets using registration methods and topological data analysis, applied to nuclear pore complex data.

bioRxiv · May 30, 2022 · PreprintCell Biology