Author

Jean‐Yves Coppée

Institut PasteurORCID 0000-0001-7747-5731Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Genetics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Organism:fungi (other)· 2 Research Focus:gene regulatory network inference· 2 Assay:ATAC-seq· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1

Frequent Co-Authors

Corinne MaufraisiD· 2 shared Frédérique Moyrand· 2 shared Guilhem JanboniD· 2 shared Jessie ColiniD· 2 shared Rachel LegendreiD· 2 shared Adam TaheralyiD· 1 shared Astrid Bruckmann· 1 shared C. HennequiniD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersMolecular Biology

Corinne MaufraisORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

GeneticsGenes and ImmunityPeer-reviewedSep 24, 2025

The epigenomic landscape of bronchial epithelial cells reveals the establishment of trained immunity

Jeanne Bigot, Rachel Legendre, Juliette Hamroune…·Claudia Chica

The paper identifies an epigenetic mechanism in bronchial epithelial cells that enables trained immunity through chromatin remodeling and gene expression changes following flagellin exposure.

15 citationstop 3%

humanATAC-seq

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Molecular BiologyPLoS BiologyPeer-reviewedJul 25, 2024

Alternative TSS use is widespread in Cryptococcus fungi in response to environmental cues and regulated genome-wide by the transcription factor Tur1

Thi Tuong Vi Dang, Corinne Maufrais, Jessie Colin…·Guilhem Janbon

The paper identifies widespread alternative TSS usage in Cryptococcus fungi in response to environmental cues and shows that the transcription factor Tur1 regulates this process genome-wide.

11 citations

fungi (other)DNA methylation

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MicrobiologybioRxivPreprintMar 24, 2024

MAPPING CHANGES OF MIRNA-MRNA NETWORKS IN LEISHMANIA-INFECTED MACROPHAGES PREDICTS REGULATORY MIRNA-TF LOOPS AS NOVEL TARGETS OF PARASITE IMMUNE SUBVERSION

Charfeddine Gharsallah, Hervé Lecoeur, Hugo Varet…·Gerald Frank Späth

2 citations

mousebulk RNA-seq

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MicrobiologybioRxivPreprintDec 8, 2023

The Cryptococcus extracellular vesicle transcriptome

Adam Taheraly, Corinne Maufrais, Frédérique Moyrand…·Guilhem Janbon

The paper investigates the transcriptome of extracellular vesicles in Cryptococcus neoformans using RNA sequencing and identifies small RNAs associated with these vesicles.

1 citation

fungi (other)bulk RNA-seq

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