Inferring EMT dynamics from cell cycle profiles using a hidden Markov framework
The paper infers EMT dynamics from cell cycle profiles using a hidden Markov model, showing it can reconstruct EMT trajectories from cell cycle data alone.
Topic · Oncology · Medicine
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
276 papers
The paper infers EMT dynamics from cell cycle profiles using a hidden Markov model, showing it can reconstruct EMT trajectories from cell cycle data alone.
Mathilde Brulé, Anaïs Horochowska, Emeline Fontaine…·François Anquez
The paper uses live single-cell imaging to show cancer stem cells form spatial niches and undergo reprogramming influenced by both lineage and cell-cell interactions.
Virginia Chamorro, Ignacio Algarra, Verónica Sanz…·Angel Miguel Garcia-Lora
The paper develops a mouse model of metastatic dormancy and identifies unique phenotypic and molecular features of dormant metastases controlled by the immune system.
Eric B. Berens, Sokchea Khou, Elaine Huang…·Lisa M. Coussens
This study identifies immune mimicry in breast cancer cells, where neoplastic cells express leukocyte receptors, enhancing tumor aggressiveness and therapy resistance.
Carlos Perez Gonzalez, David B. Brückner, Mickaël Di‐Luoffo…·Danijela Matic Vignjevic
This study shows cancer cells follow intrinsic self-organized programs that coordinate tumor cell state transitions during growth, revealing mechanical gradients and stereotyped patterns of heterogeneity and plasticity.
Alinda Anameriç, Emilia Reszczyńska, Tomasz Stankiewicz…·Matthias Nees
Charlène Renaud-Pageot, Daniele Capocefalo, Sébastien Lemaire…·Geneviève Almouzni
This study shows that CENP-A, a centromeric histone variant, epigenetically regulates epithelial-mesenchymal plasticity and heterogeneity in human cells through non-centromeric mechanisms.
Vaibhav Murthy, Rawan Makkawi, Francis Anderson…·Alexander E. Davies
The paper introduces the SITE platform for live-cell ex vivo modeling of cancer and TME interactions, revealing tissue-specific dynamics and ERK signaling patterns in breast cancer.
Giulia Silvani, Chantal Kopecky, Sara Romanazzo…·Kristopher Alan Kilian
This study shows that capillary constrictions reprogram melanoma cells to a tumorigenic cancer stem cell-like state via PIEZO1 mechanosensing.
James Brandon Reinecke, Leyre Jimenez Garcia, Amanda J. Saraf…·Ryan David Roberts
This study identifies metastasis-initiating osteosarcoma subpopulations that interact with lung and tumor cells to form a metastatic niche, highlighting tumor-stromal interactions as key drivers of metastasis.
Sofia Morazzo, Soraia Fernandes, Marina Fortea…·Giancarlo Forte
This study shows ERK3 promotes TNBC progression through EMT plasticity and collective migration, linking it to poor clinical outcomes.
Camille E. Tessier, Jennifer Derrien, Aurore M. M. Dupuy…·Vincent J. Guen
This study shows primary cilia in TNBC cells contribute to chemoresistance by supporting EMT-driven heterogeneity and stemness, and inhibiting ciliogenesis reduces this resistance.
Brennan Garland, Samuel Delisle, John Abou‐Hamad…·Luc A. Sabourin
This study shows that Sox10 deletion in luminal cells of HER2+ mice prevents tumor initiation and reprograms tumor cells to a basal phenotype.
Jin Suk Park, Yasemin Kaygusuz, Carson Kenum…·Joan Massagué
The paper identifies L1CAM-driven planar cell polarity signaling as a mechanism promoting SOX2+ metastatic progenitors in lung adenocarcinoma.
Cole Ruoff, Allison V. Mitchell, Priya Mondal…·Sridhar S. Hannenhalli
This study identifies early transcriptional signatures of drug resistance in cancer and across species, showing conservation and predictive value for treatment response.
Fahda Alsharief, Robert K. Suter, Apsra Nasir…·Gray W. Pearson
This study identifies multiple metastatic cell states in TNBC through EMT plasticity, showing that metastatic competence arises from diverse EMT programs rather than a single phenotype.
Julia Ye, Nadine Goldhammer, Poonam Vohra…·Jennifer M. Rosenbluth
This study shows that fine needle aspiration biopsy (FNAB) effectively harvests cells for patient-derived organoids modeling breast ductal carcinoma in situ, with faster growth times compared to core needle biopsy.
Fabien Bertillot, Solène Hervé, Nelly Drobjazko…·Yekaterina A. Miroshnikova
This study uses deep learning and spatial data to show how tumor architecture and cell states co-evolve, influencing colorectal cancer outcomes.
Jinhua Yang, Liangzhen Hou, Xue Wang…·Herrero-Herrero Ji
This study uses lineage tracing and single-cell analysis to show tumor plasticity precedes stable immune evasion, with AP-1 regulating EMT stabilization during immunotherapy.
Deborah de la Caridad Delgado Herrera, Alejandro Arroyo Roman, Riyan N. Campbell…·Christina M. Ferrer
This study identifies GSTT1HighCD133High cells as a stem-like subpopulation in pancreatic cancer that is sensitive to FGFR inhibitors, highlighting a therapeutic target.
Gat Rauner, Nicole C. Traugh, Colin J. Trepicchio…·Charlotte Kuperwasser
This paper introduces a breast organoid model that captures tissue organogenesis with high-resolution live imaging, revealing novel morphogenesis processes and stromal generation.
Nuria G. Martínez-Illescas, Gemma Pérez-García, María Rubert-Hernández…·María Salazar‐Roa
The paper shows that transient CB2R activation in breast cancer cells leads to irreversible luminal differentiation through chromatin remodeling, enhancing tamoxifen response and reducing resistance.
Jessica L. Christenson, Nicole S. Spoelstra, Michelle M. Williams…·Jennifer K. Richer
This study shows that lung epithelial cells promote breast cancer metastasis through wound repair mechanisms, and targeting CREB signaling with PDE4 inhibitors can reduce metastatic outgrowth.
Jean Berthelet, Sam Lee, Michael J. Roach…·Delphine Mérino
The paper identifies neurogenesis-related gene expression as a clone-specific hallmark of brain metastasis in breast cancer using a new optical barcoding tool.
N. Sanoj Rejinold, Sujong Kim, Geun‐woo Jin, Jin‐Ho Choy
This paper demonstrates that targeting the tumor microenvironment, specifically cancer-associated fibroblasts, with a novel nanotherapeutic called Penetrium can overcome resistance and metastasis in cancer models.
Reuben J. Hoffmann, AeSoon L. Bensen, Mark A. Dane…·Pepper S. Schedin
This study identifies SNO-COX-2 as a biomarker for mesenchymal phenotypes in breast cancer, showing its microenvironmental regulation and association with invasive growth.
Snehal Shabrish, Leimarembi Devi Naorem, Shubham Mohanty…·Indraneel Mittra
The paper shows that cell-free chromatin particles from cancer patients can transform mouse fibroblasts into cancer stem cells capable of forming tumors and expressing germline markers.
Mingyang Kong, Sanjima Pal, Shuyuan Wang…·Lorenzo Edwin Ferri
The paper establishes a large-scale biobank of GEA patient-derived organoids that accurately model tumor features and drug responses, enabling personalized treatment strategies.
Keito Okazaki, Madoka Kawaguchi, Shohei Murakami…·Hozumi Motohashi
This study shows Regnase-1 promotes tumor-initiating activity in NSCLC by suppressing the SOX2 pathway, and its inhibition reduces tumor growth and enhances anti-cancer immunity.