Topic · Biophysics · Biochemistry, Genetics and Molecular Biology
Advanced Fluorescence Microscopy Techniques
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
1,000+ papers
- BiophysicsJournal of the American Chemical SocietyPeer-reviewed
Electrokinetic detection of single-molecule phosphorylation
This study demonstrates electrokinetic detection of single-molecule phosphorylation, resolving phosphorylated sites and monitoring kinase cycles with single turnover resolution.
2 citations - BiophysicsbioRxivPreprint
Oblique Thick Light-Sheet Microscopy with Spatiotemporal 3D Localization for RNA Imaging in Intact 50 μm-Thick Sections
Lin Cai, Qihang Song, Dongjian Cao…·Zhen‐Li Huang
This paper introduces a microscopy technique that enables 3D RNA imaging in thick brain sections by combining spatiotemporal localization with volumetric excitation, revealing detailed neuronal distributions and expression gradients.
- BiochemistrybioRxivPreprint
Parallelization of single-molecule binding kinetic measurements via protein barcode sequencing
Sebastian Hutchinson, Ghada H. Mansour, Ahmed Rehan…·Marco Ribezzi‐Crivellari
This paper introduces a method to parallelize single-molecule binding kinetic measurements using protein barcode sequencing, enabling rapid and multiplexed screening of protein libraries.
DOI 10.1101/2025.06.05.658126 - NeuroscienceSciencePeer-reviewed
In vivo multiplex imaging of dynamic neurochemical networks with designed far-red dopamine sensors
Yu Rong Zheng, Ruyi Cai, Kui Wang…·Yulong Li
The paper introduces a far-red dopamine sensor, HaloDA1.0, enabling multiplex imaging of neurochemical networks in vivo with high sensitivity and versatility.
62 citationstop 1% - MicrobiologyOpticaPeer-reviewed
Calibration-free estimation of field dependent aberrations for single molecule localization microscopy across large fields of view
Isabel Droste, Erik Schuitema, Sajjad A. Khan…·Bernd Rieger
This paper introduces a model-based method to estimate field-dependent aberrations in single molecule localization microscopy without calibration, improving localization accuracy across large fields of view.
7 citations - BiochemistrybioRxivPreprint
A Set of Novel Far-Red Fluorescent Proteins for Temporal Domain Multiplexing and Super-Resolution Imaging
Olumayowa Fakorede, Zhien Rong, Ruizhao Wang…·Kiryl D. Piatkevich
The paper introduces novel far-red fluorescent proteins for temporal domain multiplexing and super-resolution imaging, enabling subcellular structure distinction without hardware modifications.
- BioengineeringbioRxivPreprint
A parallelly distributed microscope and software system for scalable high-throughput multispectral 3D imaging
Hehai Jiang, Logan A. Walker, Ye Li…·Dawen Cai
The paper introduces a parallelly distributed microscope and software system for high-throughput multispectral 3D imaging with high resolution and data throughput.
2 citations - NeurosciencebioRxivPreprint
Bright and Photostable Voltage Sensors Derived from mBaoJin
Hanbin Zhang, Shihao Zhou, Tatiana P. Kuzmicheva…·Kiryl D. Piatkevich
This paper introduces two photostable voltage sensors, ElectraON and ElectraOFF, which enable longer in vivo recordings by improving photostability compared to existing GEVIs.
- NeuroscienceOptics LettersPeer-reviewed
Focus-Tunable Two-Photon Fiberscope Enabling in vivo Imaging at Selected Depths
Yuehan Liu, J. Huang, Xingde D. Li
This paper introduces a two-photon fiberscope with tunable focus for in vivo imaging at selected depths, demonstrating its performance using phantoms and biological samples.
- NeurosciencebioRxivPreprint
In vivo deep-brain microscopy at submicrometer resolution with refractive index-matched prism interfaces
Taiga Takahashi, Yuanyuan Zhou, Motosuke Tsutsumi…·Masakazu Agetsuma
This paper develops an implantable microprism interface for deep-brain imaging with submicrometer resolution and wide-field two-photon microscopy.
- NeurosciencebioRxivPreprint
Prolonged Single Neuron Voltage Imaging in Behaving Mammals
Yangyang Wang, Cara R. Ravasio, Yuxin Zhou, Xue Han
The paper demonstrates prolonged single-neuron voltage imaging in behaving mice using ElectraOFF, revealing plasticity changes during neuromodulation.
3 citations - BiophysicsBiophysical JournalPeer-reviewed
Single Particle Tracking of Genetically Encoded Nanoparticles: Optimizing Expression for Cytoplasmic Diffusion Studies
Elizaveta Korunova, Vitali Sikirzhytski, Jeffery L. Twiss…·Michael S. Shtutman
This paper optimizes genetically encoded nanoparticle expression to improve single-particle tracking of cytoplasmic diffusion in mammalian cells, showing increased diffusivity and better tracking quality.
- BiophysicsNature CommunicationsPeer-reviewed
Super-resolution imaging in whole cells and tissues via DNA-PAINT on a spinning disk confocal with optical photon reassignment
Cecilia Zaza, Megan D. Joseph, Olivia P. L. Dalby…·Sabrina Simoncelli
This paper introduces a DNA-PAINT system with optical photon reassignment on a spinning disk confocal to achieve high-resolution imaging in thick samples and large fields of view.
- BioengineeringbioRxivPreprint
A photostable genetically encoded voltage indicator for imaging neural activities in tissue and live animals
Chang Qing Cao, Ruixin Zhu, Shihao Zhou…·Peng Zou
The paper introduces Vega, a photostable GEVI with high sensitivity and fast response, enabling high-fidelity voltage imaging in tissue and live animals.
- BiophysicsAnalytical ChemistryPeer-reviewed
FLIMPA: A versatile software for Fluorescence Lifetime Imaging Microscopy Phasor Analysis
Sofia Kapsiani, Nino F. Läubli, Edward Ward…·Gabriele S. Kaminski Schierle
FLIMPA is an open-source software for FLIM phasor analysis that integrates data from multiple trials and provides tools for quantifying microtubule depolymerisation.
14 citationstop 4% - NeuroscienceCommunications BiologyPeer-reviewed
Three-photon in vivo imaging of neurons and glia in the medial prefrontal cortex with sub-cellular resolution
Falko Fuhrmann, Felix Christopher Nebeling, Fabrizio Musacchio…·Martin Fuhrmann
This paper demonstrates three-photon in vivo imaging in the mouse medial prefrontal cortex to achieve sub-cellular resolution of neuronal and glial activity at unprecedented depths.
- BiophysicsScience AdvancesPeer-reviewed
Gradual labeling with fluorogenic probes for MINFLUX nanoscopy of densely packed structures
Longfang Yao, Dongjuan Si, Liwen Chen…·Miṅ Gu
This paper introduces GLF-MINFLUX, a method for nanoscale imaging of densely packed structures, achieving improved localization precision and faster acquisition.
6 citations - NeuroscienceNature MethodsPeer-reviewed
Imaging neuronal voltage beyond the scattering limit
Tsai‐Wen Chen, Xianbin Huang, Sarah E. Plutkis…·Bei‐Jung Lin
This paper introduces a method to image neuronal voltage with super-resolution beyond tissue scattering limits, achieving high precision in dense neuronal populations.
- BiophysicsProceedings of the National Academy of SciencesPeer-reviewed
Near-Zero Photon Bioimaging
L. J. Sheneman, Sulaimon Balogun, J. L. Johnson…·Andreas E. Vasdekis
This paper introduces near-zero photon imaging, a method that captures high-fidelity biological images at ultralow irradiance and high speed using AI.
5 citations - BiophysicsJournal of the American Chemical SocietyPeer-reviewed
Triple labeling resolves a GPCR intermediate state by 3-color single molecule FRET
Léo Bonhomme, Ecenaz Bilgen, Caroline Clerté…·Robert B. Quast
This paper introduces a triple-labeling strategy for single molecule FRET to study conformational changes in GPCRs, revealing a previously unknown intermediate state.
23 citationstop 1% - BiophysicsbioRxivPreprint
DeepTRACE: Flexible Machine Learning for Analysis and Discovery in Single Molecule Tracks
Oliver J. Pambos, Jacob A. R. Wright, Achillefs N. Kapanidis
DeepTRACE is a machine learning tool that analyzes single-molecule tracks in living cells, uncovering molecular processes and relationships not present in training data.
1 citation - Cancer BiologyChemical & Biomedical ImagingPeer-reviewed
Multimodal Phasor Approach to study breast cancer cells invasion in 3D spheroid model
Giulia Tedeschi, Francesco Palomba, Lorenzo Scipioni, Michelle A. Digman
The paper uses a multimodal imaging approach to study breast cancer cell invasion in 3D spheroids, quantifying changes in metabolism, fatty acid storage, and collagen organization over time.
- Cell BiologybioRxivPreprint
IntAct-U-ExM: Ultrastructure Expansion microscopy of actin networks via an internally-tagged actin
Anubhav Dhar, Nishaant Kumar Palani Balaji, Sanjana Mullick…·Saravanan Palani
The paper develops IntAct-U-ExM to visualize actin networks with super-resolution, showing improved resolution of actin structures in yeast and mammalian cells.
- Cell BiologyJournal of MicroscopyPeer-reviewed
PerfectlyAverage: a classical open-source software method to determine the optimal averaging parameters in laser scanning fluorescence microscopy
Shannan Foylan, Liam M. Rooney, W. B. Amos…·Gail McConnell
PerfectlyAverage determines optimal averaging parameters in laser scanning fluorescence microscopy by analyzing SNR, photobleaching, and PSD to reduce acquisition time.
- BiophysicsbioRxivPreprint
Chip-Based 3D Interferometric Nanoscopy
Wei Wang, Hangfeng Li, Yilin Wang…·Pakorn Kanchanawong
This paper introduces SiLM, a chip-based 3D single-molecule localization microscopy method that achieves high axial precision with a single-objective lens, comparable to 4Pi methods.
1 citation - BioinformaticsNature MethodsPeer-reviewed
Dark-based Optical Sectioning assists Background Removal in Fluorescence Microscopy
Ruijie Cao, Yaning Li, Yao Zhou…·Peng Xi
This paper introduces a method to remove defocus backgrounds in fluorescence microscopy using dark channels and dual frequency separation, significantly improving image quality.
41 citationstop 1% - Developmental BiologybioRxivPreprint
Novel Fluorescent and Photoconvertible Fusions Reveal Dorsal Activator Dynamics
Meghan A. Turner, Nicholas M Gravina, Bruno Moretti…·Hernán G. García
The paper introduces four new fluorescent protein fusions for Dorsal to study its dynamics in fruit fly embryos.
2 citations - BiophysicsProceedings of the National Academy of SciencesPeer-reviewed
Identifying Intermolecular Interactions in Single-Molecule Localization Microscopy
Xingchi Yan, Polly Y. Yu, Arvind Srinivasan…·Maxim B. Prigozhin
This paper develops a probabilistic algorithm to accurately identify and quantify intermolecular interactions using single-molecule localization microscopy.