Author

R. J. Parsons

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:cell type annotation· 2 Research Focus:ecology & biodiversity· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

A. M. Rivera· 2 shared B. Temperton· 2 shared C. M. Theriot· 2 shared J. R. Fletcher· 2 shared A. A. Zayed· 1 shared A. Bell· 1 shared A. D. Reed· 1 shared A. Farbos· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMicrobiology

A. M. Rivera

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4 papers

Recent·Most cited

MicrobiologybioRxivSep 19, 2022

Long-read powered viral metagenomics in the oligotrophic Sargasso Sea

J. L. Warwick-Dugdale, F. Tian, M. L. Michelsen…·B. Temperton

This study uses long-read sequencing to analyze viral communities in the Sargasso Sea, identifying new phage populations and highlighting the importance of long reads for viral genome diversity and function.

DOI 10.1038/s41467-024-48300-6

metagenomicsdeep learning

𝕏 PostBluesky

MicrobiologybioRxivJun 17, 2022

Influence of short and long term processes on SAR11 communities in open ocean and coastal systems

L. M. Bolanos, K. Tait, P. J. Somerfield…·B. Temperton

This study examines SAR11 bacterial ecotype seasonality in two North Atlantic regions, showing that short-term environmental changes can disrupt seasonal patterns.

DOI 10.1038/s43705-022-00198-1

metagenomicsstatistical model

𝕏 PostBluesky

MicrobiologybioRxivPreprintNov 12, 2021

The Stickland fermentation precursor trans-4-hydroxyproline differentially impacts the metabolism of Clostridioides difficile and commensal Clostridia

C. M. Theriot, A. D. Reed, J. R. Fletcher…·E. P. Balskus

This study investigates how trans-4-hydroxyproline affects the metabolism of C. difficile and commensal Clostridia, revealing differential gene expression and microbiota changes in mice.

DOI 10.1101/2021.11.12.468462

mousebulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivAug 6, 2020

Clostridioides difficile exploits toxin-mediated inflammation to alter the host nutritional landscape and exclude competitors from the gut microbiota

J. R. Fletcher, C. M. Pike, R. J. Parsons…·C. M. Theriot

This study shows C. difficile uses toxin-induced inflammation to alter host nutrient availability and outcompete Bacteroides by utilizing collagen-derived amino acids.

DOI 10.1038/s41467-020-20746-4

metagenomicsproteomics

𝕏 PostBluesky