Author
B. Palsson
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2018-2022 · peak 5/yrCo-Author Collaboration Network
10 top collaborators · 45 mutual co-author links9 papers
Recent·Most cited
Laboratory-acquired mutations fall outside the wild-type alleleome of Escherichia coli
E. A. Catoiu, P. V. Phaneuf, J. Monk, B. Palsson
The paper compares laboratory-acquired mutations to the wild-type alleleome of E. coli, finding that lab mutations rarely exist in the wild-type alleleome and are less likely to be synonymous.
bioRxiv · Apr 4, 2022 · PreprintBioengineering
Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators and role in key physiological responses
S. Poudel, H. Tsunemoto, Y. Seif, A. V. Sastry, R. Szubin, S. Xu, H. Machado, C. Olson, A. Anand, J. Pogliano, V. Nizet, B. Palsson
This paper identifies 29 independently modulated gene sets in S. aureus using ICA, linking them to regulators and physiological responses.
Proceedings of the National Academy of Sciences · Jul 2, 2020Peer-reviewedMicrobiology
Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus
H. Machado, Y. Seif, G. Sakoulas, C. A. Olson, R. Szubin, B. Palsson, V. Nizet, A. M. Feist
This study identifies media-specific mutational mechanisms of vancomycin resistance in S. aureus using adaptive laboratory evolution and sequencing.
bioRxiv · Jun 7, 2020Microbiology
Characterizing the response of Acinetobacter baumannii ATCC 17978 to azithromycin in multiple in vitro growth conditions
N. A. Dillon, Y. Seif, H. Tsunemoto, S. Poudel, M. Meehan, R. Szubin, C. Olson, A. Rajput, G. Alarcon, A. Lamsa, A. Vrbanac, J. Sugie, S. Dahesh, J. Monk, P. Dorrestein, , V. Nizet
This study examines how MDR A. baumannii responds to azithromycin in different growth conditions using multiple analytical techniques.
bioRxiv · May 19, 2020 · PreprintMicrobiology
Decomposition of transcriptional responses provides insights into differential antibiotic susceptibility
A. V. Sastry, N. Dillon, S. Poudel, Y. Hefner, S. Xu, R. Szubin, A. Feist, V. Nizet, B. Palsson
The paper investigates how media composition affects antibiotic susceptibility in E. coli using transcriptomics and machine learning, identifying key regulators and shifts in respiration and iron availability.
bioRxiv · May 4, 2020 · PreprintMicrobiology
Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media
Y. Seif, S. Poudel, H. Tsunemoto, R. Szubin, M. J. Meehan, C. Olson, A. Rajput, G. Alarcon, A. Lamsa, N. Dillon, A. Vrbanac, J. Sugie, S. Daesh, J. Monk, P. Dorrestein, , V. Nizet
This study investigates how nafcillin affects HA-MRSA D592 in different media types, revealing media-dependent antibiotic activity through multi-dimensional analysis.
bioRxiv · Apr 30, 2020 · PreprintMicrobiology
Impact of insertion sequences on convergent evolution of Shigella species
J. Hawkey, J. M. Monk, H. Billman-Jacobe, B. Palsson, K. E. Holt
This study examines the role of insertion sequences in the convergent evolution of Shigella species, showing their contribution to gene loss and metabolic streamlining across species.
bioRxiv · Jun 24, 2019Microbiology
Temperature-dependent estimation of Gibbs energies using an updated group contribution method
B. Du, Z. Zhang, S. Gruber, J. Yurkovich, B. Palsson, D. Zielinski
The paper updates a group contribution method to estimate Gibbs energies and reaction equilibrium constants across temperatures and metal ion concentrations.
bioRxiv · Mar 27, 2018Biophysics