Author

C. Topp

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Assay:imaging· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

M. Li· 3 shared A. Miller· 2 shared D. H. Chitwood· 2 shared L. Klein· 2 shared V. Coneva· 2 shared A. Atta-Boateng· 1 shared A. Batushansky· 1 shared A. Baumgartner· 1 shared

Activity by Year

2017-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersPlant Biology

M. Li

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Author profile →

3 papers

Recent·Most cited

Characterizing grapevine (Vitis spp.) inflorescence architecture using X-ray imaging: implications for understanding cluster density

M. Li, L. L. Klein, K. E. Duncan, N. Jiang, D. H. Chitwood, J. P. Londo, A. Miller, C. Topp

The paper uses X-ray imaging and computational methods to analyze grapevine inflorescence architecture across species, identifying traits linked to cluster density and phylogenetic patterns.

bioRxiv · May 24, 2019Plant Biology

Persistent homology demarcates a leaf morphospace

M. Li, H. An, R. Angelovici, C. Bagaza, A. Batushansky, L. Clark, V. Coneva, M. Donoghue, E. Edwards, D. Fajardo, H. Fang, M. Frank, T. Gallaher, S. Gebken, T. Hill, , D. H. Chitwood

This paper uses persistent homology to analyze leaf shapes from 182,707 leaves across 141 plant families, revealing phylogenetic and geographic differences in leaf morphology.

bioRxiv · Jun 20, 2017Plant Biology

Morphological plant modeling: Unleashing geometric and topological potential within the plant sciences

A. Bucksch, A. Atta-Boateng, A. F. Azihou, M. Balduzzi, D. Battogtokh, A. Baumgartner, B. Binder, S. Braybrook, C. Chang, V. Coneva, T. DeWitt, A. Fletcher, M. Gehan, D. Hernan Diaz Martinez, L. Hong, , D. Chitwood

This paper discusses the importance of mathematical modeling in plant morphology and outlines challenges and opportunities for integrating geometric and topological approaches in plant science research and education.

bioRxiv · Feb 8, 2017Plant Biology