Author

D. Rubin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioengineering· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Assay:imaging· 2 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:deep learning· 1

Frequent Co-Authors

A. Fiebig· 2 shared E. Chang· 2 shared M. Schnizlein· 2 shared M. Sogin· 2 shared S. Crosson· 2 shared S. Dalal· 2 shared A. Basu· 1 shared A. Dubey· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersMicrobiology

A. Fiebig

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Microbially-catalyzed conjugation of GABA and tyramine to bile acids

M. Mullowney, A. Fiebig, M. Schnizlein, M. McMillin, A. R. Rose, J. Koval, D. Rubin, S. Dalal, M. Sogin, E. Chang, A. Sidebottom, S. Crosson

The paper identifies bacteria that conjugate GABA and tyramine to bile acids in the human gut and shows these conjugates are present in stool and J-pouch contents.

bioRxiv · Sep 25, 2023Microbiology

Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient

A. Fiebig, M. Schnizlein, S. Pena-Rivera, F. Trigodet, A. Dubey, M. Hennessy, A. Basu, S. Pott, S. Dalal, D. Rubin, M. Sogin, A. M. Eren, E. Chang, S. Crosson

This study identifies genes and pathways in B. fragilis that affect its fitness in bile acids, using a barcoded mutant library and transcriptomic analysis.

bioRxiv · May 11, 2023 · PreprintMicrobiology

Multiplexed Imaging Analysis of the Tumor-Immune Microenvironment Reveals Predictors of Outcome in Triple-Negative Breast Cancer

A. N. Patwa, R. Yamashita, J. Long, M. Angelo, L. Keren, D. Rubin

The paper uses multiplexed ion-beam imaging to analyze the tumor-immune microenvironment in triple-negative breast cancer, identifying immunological predictors of patient outcomes.

bioRxiv · Jan 6, 2021Cancer Biology

Deep Active Lesion Segmentation

A. Hatamizadeh, A. Hoogi, D. Sengupta, W. Lu, B. Wilcox, D. Rubin, D. Terzopoulos

This paper introduces DALS, a lesion segmentation framework combining CNNs and ACMs, showing better performance on small datasets across brain, liver, and lung images.

bioRxiv · Oct 7, 2019 · PreprintBioengineering