Author

D. Tsuchiya

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Cell Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:cell type annotation· 4 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Assay:proteomics· 2 Organism:zebrafish· 2 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

N. Rohner· 4 shared Y. Wang· 3 shared J. Krishnan· 2 shared J. L. Persons· 2 shared S. E. Smith· 2 shared A. Bernal-Rivera· 1 shared A. C. Box· 1 shared A. C. Keene· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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4 shared papersEvolutionary Biology

N. Rohner

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Sugar assimilation underlying dietary evolution of Neotropical bats

J. Camacho, A. Bernal-Rivera, V. Pena, P. Morales-Sosa, S. Robb, J. Russell, K. Yi, D. Tsuchiya, Y. Wang, O. E. Murillo-Garcia, N. Rohner

This study examines sugar assimilation in Neotropical bats, revealing metabolic adaptations to different diets through glucose tolerance tests, genome analysis, and gene expression studies.

bioRxiv · Jul 2, 2023Evolutionary Biology

Defining a core configuration for human centromeres during mitosis

A. S. Gupta, C. Seidel, D. Tsuchiya, S. A. McKinney, Z. Yu, S. E. Smith, J. Unruh, J. Gerton

The paper uses ChIP-seq and microscopy to determine the 3D organization of centromere components, revealing a core configuration that explains how centromeres function during mitosis.

bioRxiv · May 10, 2023 · PreprintCell Biology

Liver-derived cell lines from cavefish Astyanax mexicanus as an in vitro model for studying metabolic adaptation

J. Krishnan, Y. Wang, O. Kenzior, H. Hassan, L. Olsen, D. Tsuchiya, Y. Wang, C. Zhao, N. Rohner

The paper develops liver-derived cell lines from cavefish Astyanax mexicanus to study metabolic adaptation and provides their characterization.

Scientific Reports · Jun 16, 2022Peer-reviewedEvolutionary Biology

Repeated evolution of circadian clock dysregulation in cavefish populations

K. L. Mack, J. B. Jaggard, J. L. Persons, C. N. Passow, B. A. Stanhope, E. Ferrufino, D. Tsuchiya, S. E. Smith, B. D. Slaughter, J. E. Kowalko, N. Rohner, A. C. Keene, S. E. McGaugh

This study shows that cavefish populations have independently evolved circadian clock dysregulation, with reduced transcriptome rhythmicity and sleep reduction linked to specific gene mutations.

bioRxiv · Jan 14, 2020Evolutionary Biology

Adaptation to low parasite abundance affects immune investment strategy and immunopathological responses of cavefish

R. Peuss, A. C. Box, S. Chen, Y. Wang, D. Tsuchiya, J. L. Persons, A. Kenzior, E. Maldonado, J. Krishnan, J. P. Scharsack, B. P. Slaughter, N. Rohner

This study shows that cavefish, adapted to low parasite abundance, have a more sensitive immune system with reduced proinflammatory responses and shifted immune investment to adaptive immunity.

bioRxiv · Dec 18, 2019Evolutionary Biology