Author

H. W. Barkema

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:proteomics· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:chicken / avian· 1 Research Focus:clustering· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

B. Han· 2 shared J. Gao· 2 shared J. P. Kastelic· 2 shared A. Grimsrud· 1 shared B. E. Pickett· 1 shared C. Cullimore· 1 shared C. G. Knight· 1 shared D. L. Erickson· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

B. Han

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Author profile →

4 papers

Recent·Most cited

MicrobiologybioRxivPreprintJul 26, 2023

Genes associated with fitness and disease severity in the pan-genome of mastitis-associated Escherichia coli

M. A. Olson, C. Cullimore, W. D. Hutchison…·D. L. Erickson

This study identifies accessory genes in mastitis-associated E. coli linked to disease severity and competitive fitness using genome-wide association and in vivo competition assays.

DOI 10.1101/2023.07.26.549771

E. coliwhole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivAug 1, 2022

Comparative genomic analyses of Lactococcus garvieae isolated from bovine mastitis in China

Y. Lin, J. Han, H. W. Barkema…·Z. Deng

This study characterizes Lactococcus garvieae isolates from bovine mastitis in China, identifying genetic diversity, antimicrobial resistance, virulence factors, and potential host adaptation.

DOI 10.1128/spectrum.02995-22

whole-genome sequencingstatistical model

𝕏 PostBluesky

MicrobiologybioRxivPreprintJun 25, 2021

Use of untargeted magnetic beads to capture Mycobacterium smegmatis and Mycobacterium avium paratuberculosis prior detection by mycobacteriophage D29 and Real-Time-PCR

G. Rojas-Ponce, D. Sauvageau, R. Zemp…·S. Evoy

The paper evaluates untargeted magnetic beads for capturing Mycobacterium species from various samples, showing higher recovery and sensitivity compared to centrifugation.

DOI 10.1101/2021.06.25.449992

proteomicsexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivFeb 27, 2019

Prototheca zopfii Genotype II induces mitochondrial apoptosis in models of bovine mastitis

M. Shahid, E. R. Cobo, L. Chen…·B. Han

This paper investigates how Prototheca zopfii genotype II causes mitochondrial apoptosis and inflammation in bovine mastitis models.

DOI 10.1038/s41598-020-57645-z

mousechicken / avian

𝕏 PostBluesky