K. Schneitz

A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context

The paper introduces computational tools for 3D nuclei segmentation and analysis, showing variations in nuclear-to-cell volume ratios across tissues.

Diverse 3D cellular patterns underlie the development of Cardamine hirsuta and Arabidopsis thaliana ovules

The paper compares 3D cellular architectures of ovules from Cardamine hirsuta and Arabidopsis thaliana to reveal differences in their internal cellular growth patterns despite similar shapes.

The Arabidopsis MCTP member QUIRKY regulates the formation of the STRUBBELIG receptor kinase complex

This study identifies QKY's role in stabilizing SUB at the plasma membrane by promoting SUB homo-oligomerization and forming a QKY-SUB complex.

The annotation and analysis of complex 3D plant organs using 3DCoordX

The paper develops 3DCoordX, a tool for spatially annotating cells in 3D plant organs, revealing new insights into growth patterns across species.

Cell wall damage attenuates root hair cell patterning and tissue morphogenesis mediated by the Arabidopsis receptor kinase STRUBBELIG.

The paper shows that cell wall damage disrupts root hair patterning and floral morphogenesis via attenuation of SUB signaling in Arabidopsis.

A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule

The paper creates a 3D digital atlas of Arabidopsis ovule development, revealing cellular growth patterns and new functions in morphogenesis.

Accurate And Versatile 3D Segmentation Of Plant Tissues At Cellular Resolution

PlantSeg provides a deep learning-based pipeline for accurate 3D segmentation of plant tissues into individual cells across various developmental contexts.

The Arabidopsis receptor kinase STRUBBELIG regulates the response to cellulose deficiency

This paper shows that the Arabidopsis receptor kinase STRUBBELIG regulates the cellular response to cellulose deficiency by affecting reactive oxygen species, stress gene induction, and cell wall integrity.

The AGC protein kinase UNICORN controls planar growth by attenuating PDK1 in Arabidopsis thaliana

This paper identifies PDK1 as a novel factor regulated by UCN that suppresses uncontrolled growth in Arabidopsis integuments and petals.