M. Tsiantis

A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context

The paper introduces computational tools for 3D nuclei segmentation and analysis, showing variations in nuclear-to-cell volume ratios across tissues.

The annotation and analysis of complex 3D plant organs using 3DCoordX

The paper develops 3DCoordX, a tool for spatially annotating cells in 3D plant organs, revealing new insights into growth patterns across species.

Adaptation to plant shade relies on rebalancing the transcriptional activity of the PIF-HFR1 regulatory module

The paper compares shade adaptation mechanisms in Arabidopsis thaliana and Cardamine hirsuta, showing that C. hirsuta's more stable HFR1 protein reduces PIF activity, altering growth responses to light.

Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species

The paper identifies genes under purifying selection and species-specific expression signatures in PTI responses across Brassicaceae species using comparative transcriptomics.

Fine-scale ecological and transcriptomic data reveal niche differentiation of an allopolyploid from diploid parents in Cardamine

This study examines the ecological and transcriptomic differences between an allopolyploid plant and its diploid parents, finding niche differentiation linked to water availability.

Oil body formation in Marchantia polymorpha is controlled by MpC1HDZ and serves as a defense against arthropod herbivores

This study identifies MpC1HDZ as a transcription factor controlling oil body formation in liverworts, which functions as a defense against herbivores rather than abiotic stress.