Author

M. Vaughn

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Physiology· 1 Plant Biology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Approach:statistical model· 1

Frequent Co-Authors

J. Song· 2 shared A. Bucksch· 1 shared A. Edmonds· 1 shared A. Ford· 1 shared A. K. Bera· 1 shared A. M. Cooksey· 1 shared A. Nelson· 1 shared A. Ramsey· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersScientific Communication & Education

J. Song

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Author profile →

4 papers

Recent·Most cited

CyVerse: Cyberinfrastructure for Open Science

T. L. Swetnam, P. B. Antin, R. Bartelme, A. Bucksch, D. Camhy, G. Chism, I. Choi, A. M. Cooksey, M. Cosi, C. Cowen, M. Culshaw-Maurer, R. Davey, S. Davey, U. Devisetty, T. Edgin, , J. Wregglesworth

The paper describes CyVerse, an open-source cyberinfrastructure platform for life sciences, and outlines a strategic blueprint for managing SaaS and IaC as free and open-source software.

bioRxiv · Jun 16, 2023Scientific Communication & Education

Large-scale design and refinement of stable proteins using sequence-only models

J. M. Singer, S. Novotney, D. Strickland, H. K. Haddox, N. Leiby, G. J. Rocklin, C. M. Chow, A. Roy, A. K. Bera, F. C. Motta, L. Cao, E.-M. Strauch, T. M. Chidyausiku, A. Ford, E. Ho, , E. Klavins

The paper presents two neural network models for predicting and generating stable proteins based on amino acid sequences, showing improved stability in both expert-designed and model-generated proteins.

bioRxiv · Mar 12, 2021Biophysics

Resting heart rate and psychopathy: Findings from the Add Health Survey

N. A. Kavish, Q. Fu, M. Vaughn, Z. Qian, B. Boutwell

This study examines the relationship between resting heart rate and psychopathic traits using a large national sample, finding no significant association after controlling for age, sex, and race.

bioRxiv · Jun 13, 2018Physiology

Subtle perturbations of the maize methylome reveal genes and transposons silenced by DNA methylation

S. N. Anderson, G. Zynda, J. Song, Z. Han, M. Vaughn, Q. Li, N. M. Springer

The paper identifies genes and transposons affected by context-specific DNA methylation changes in maize mutants, revealing distinct regulatory patterns for CMT and RdDM pathways.

bioRxiv · Nov 21, 2017Plant Biology