Vasily Zaburdaev

scXMatch quantifies distribution shifts between single-cell data from different conditions using a non-parametric graph-based test, showing robust performance across gene expression, chromatin accessibility, and morphology data.

The paper develops an agent-based model to simulate axonal growth during zebrafish spinal cord regeneration and shows it aligns with experimental imaging data.

The paper presents an in silico model of neurite growth that simulates interactions with the extracellular matrix, showing that stiffer environments promote more persistent axonal growth.

This study shows that the bacterial protein TasA forms a metallogel with zinc ions, transitioning from fibers to sheets and exhibiting viscoelastic properties.

This study shows that the nuclear-to-cytoplasmic density ratio is conserved across eukaryotes and drives cellular organization, with implications for diseases like cancer and senescence.

The paper investigates how cytoplasmic density changes during cell differentiation and how this affects mitotic spindle architecture and scaling.

This study quantifies morphodynamic features of peritoneal resident tissue macrophages in vivo to distinguish functional states and assess tissue age.

This study uses differential dynamic microscopy to analyze cytoplasmic dynamics in Xenopus laevis egg extracts and HeLa cells, revealing subdiffusive motion and cytoskeletal influences on fluidity.

The paper investigates how mutations in SOX11, MID1, and TCF4 affect neurite formation in neurodevelopmental disorders, revealing shared molecular and cellular mechanisms.

The paper identifies LpdA as the source of intrinsic autofluorescence in filamentous actinobacteria and shows its role in metabolic organization during growth.

This paper estimates mass density from refractive index measurements using a method that incorporates biochemical composition assumptions and uncertainty analysis, validated on biological samples.

The paper uses DNA-nanomotifs to mimic transcriptional cluster dispersal in stem cells, showing that amphiphilic effects control droplet size and shape.

The paper shows that Pol II transcriptional clusters undergo a conserved condensation-dispersal sequence during stem cell differentiation across species.

The paper quantifies chromatin modification dynamics during zygotic genome activation in zebrafish embryos using fluorescent antibody imaging.