synaptic & neural circuits
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1,000+ papers
- Animal Behavior & CognitionbioRxivPreprint
Quantifying social roles in multi-animal videos using subject-aware deep-learning
Kelly Goss, Lézio Soares Bueno-Júnior, Katherine A. Stangis…·Yujia Hu
This paper introduces a subject-aware deep-learning system to quantify social roles in multi-animal groups across species and assays.
12 citations - BioengineeringIEEE Transactions on Biomedical EngineeringPeer-reviewed
Inter-modality source coupling: a fully- automated whole-brain data-driven structure- function fingerprint shows replicable links to reading in a large-scale (N~8K) analysis
Aline Kotoski, Jingyu Liu, Robin Morris, Vince D. Calhoun
This paper introduces IMSC, a method to analyze coupling between brain structure and function, and finds that reading ability correlates with specific patterns of function-structure coupling in children.
9 citations - BioengineeringPLoS Computational BiologyPeer-reviewed
NeuroMotion: Open-source Simulator with Neuromechanical and Deep Network Models to Generate Surface EMG signals during Voluntary Movement
Shihan Ma, Irene Méndez Guerra, Arnault H. Caillet…·Dario Farina
NeuroMotion generates synthetic EMG signals during voluntary movements by integrating musculoskeletal models, neural networks, and motor unit models, enabling analysis of neuromechanical interactions.
17 citations - BiophysicsNature Structural & Molecular BiologyPeer-reviewed
Early intermediates in bacterial RNA polymerase promoter melting visualized by time-resolved cryo-electron microscopy
Ruth M. Saecker, Andreas U. Müller, Brandon F. Malone…·Seth Andrew Darst
This study uses time-resolved cryo-EM to visualize early intermediates in bacterial RNA polymerase promoter melting, revealing key steps in the formation of the transcription-competent open complex.
- Animal Behavior & CognitionPsychological ReviewPeer-reviewed
Holistic inference explains human perception of stimulus orientation
The paper introduces a holistic inference model for stimulus orientation perception, showing it accurately describes human responses better than previous models.
- Animal Behavior & CognitionFrontiers in Bioengineering and BiotechnologyPeer-reviewed
A leg model based on anatomical landmarks to study 3D joint kinematics of walking in Drosophila melanogaster
Moritz Haustein, Alexander Blanke, Till Bockemühl, Ansgar Büschges
This study develops a 3D leg model for Drosophila melanogaster using anatomical landmarks to analyze joint kinematics during walking, revealing differences in joint motion and the benefits of natural rotational axis alignment.
11 citations - BiochemistryeLifePeer-reviewed
Cryo-electron tomographic investigation of native hippocampal glutamatergic synapses
Aya Matsui, Cathy J. Spangler, Johannes Elferich…·Eric Gouaux
The paper develops methods to image glutamatergic synapses in hippocampal tissue using cryo-electron tomography, enabling high-resolution visualization of synaptic structures.
45 citationstop 2% - Animal Behavior & CognitionbioRxivPreprint
Rescuing impaired hippocampal-cortical interactions and spatial reorientation learning and memory during sleep in a mouse model of Alzheimer's disease using hippocampal 40 Hz stimulation
Sarah Danielle Cushing, Shawn C. Moseley, Alina C. Stimmell…·Aaron A. Wilber
This paper shows that 40 Hz hippocampal stimulation rescues spatial learning and memory in Alzheimer's mice but not the link between sleep coordination and memory performance.
3 citations - Animal Behavior & CognitionbioRxivPreprint
Inverse Reinforcement Learning to Study Motivation in Mouse Behavioral Paradigms
Andre Telfer, Afsoon Alidadi Shamsabadi, George Savin…·Alfonso B. Abizaid
This paper applies inverse reinforcement learning to directly infer the underlying motivations driving mouse behavior in behavioral paradigms.
DOI 10.1101/2024.06.13.598948 - BiophysicsbioRxiv
Wavenumber-dependent transmission of subthreshold waves on electrical synapses network model of Caenorhabditis elegans
Iksoo Chang, Taegon Chung, Sang‐Yeol Kim
The paper investigates wavenumber-dependent transmission of subthreshold oscillations in a C. elegans electrical synapse network model, identifying transmission patterns and thresholds.
DOI 10.7554/elife.99904 - BioengineeringPLoS ONEPeer-reviewed
A planar neuromuscular controller to simulate compensation strategies in the sit-to-walk movement.
Eline van der Kruk, Thomas Geijtenbeek
This paper develops and validates a neuromusculoskeletal model with reflex-based muscle control to simulate sit-to-walk movements under varying conditions and study age-related compensation strategies.
14 citations - Animal Behavior & CognitionbioRxivPreprint
Spatio-temporal learning in a mass-recruiting leaf-cutting ant (Acromyrmex subterraneus)
Fernanda Tiemi Nakashima Ferreira, Pedro Constantino, Marcelo Arruda Fiuza de Toledo, André Frazão Helene
This study shows leaf-cutting ants can anticipate sucrose availability through spatio-temporal learning, adjusting their foraging behavior to predict and locate food.
DOI 10.1101/2024.06.12.598721 - BioengineeringbioRxivPreprint
Incorporating Microbial Pilin-Based Nanowires into a Water-Stable Electronic Polymer Composite
Jayesh M. Sonawane, E. Henry Chia, Toshiyuki Ueki…·Derek R. Lovley
This study creates a water-stable conductive composite using microbial pilin-based nanowires and demonstrates its use as a sensitive ammonia sensor with tunable response.
DOI 10.1101/2024.06.11.598525 - Animal Behavior & CognitionbioRxivPreprint
WNKs regulate mouse behavior and alter central nervous system glucose uptake and insulin signaling
Ankita Bachhawat Jaykumar, Derk D. Binns, Clinton A. Taylor…·Melanie H. Cobb
This study shows that inhibiting WNK kinases improves learning and memory in mice by enhancing hippocampal glucose uptake and insulin signaling.
2 citations - BiophysicsbioRxivPreprint
Should I stay or should I go? Spatio-temporal dynamics of bacterial biofilms in confined flows
Massinissa Benbelkacem, Gabriel Ramos, Fatima El Garah…·Yohan Davit
This study investigates how flow and bacterial growth interact to control biofilm dynamics in microchannels, revealing self-sustained fluctuations due to pressure build-up and stochastic sloughing events.
DOI 10.1101/2024.06.07.597893 - PhysiologyScientific ReportsPeer-reviewed
Improvisation and Live Accompaniment Increase Motor Response and Reward During a Music Playing Task
Anna Palumbo, Karleigh Groves, Eva Luna Muñoz-Vidal…·Pablo Ripollés
This study shows that music improvisation with live accompaniment increases motor response and enjoyment during a music-playing task compared to other conditions.
- Cell BiologyJournal of NeurosciencePeer-reviewed
Phospholipid Scramblase-1 is required for efficient neurotransmission and synaptic vesicle retrieval at cerebellar synapses
Margherita Caputo, Daniela Ivanova, Sylvette Chasserot‐Golaz…·Stéphane Ory
This study shows that PLSCR1 is essential for synaptic vesicle retrieval and neurotransmission by regulating phospholipid asymmetry at cerebellar synapses.
8 citations - BiophysicsPhysical Review LettersPeer-reviewed
Exact distribution of the quantal content in synaptic transmission
K. Rijal, N. I. C. Müller, E. Friauf…·D. Das
The paper derives the exact distribution of quantal content in synaptic transmission for different AP input patterns and validates it with electrophysiological data from mice.
DOI 10.1103/physrevlett.132.228401 - BioengineeringbioRxivPreprint
Selective illumination on line-scanning confocal mesoscope enhances background rejection in cortex-wide mouse brain imaging
The paper introduces a selective illumination method for a line-scanning confocal mesoscope to improve background rejection in in vivo mouse brain imaging.
- Animal Behavior & CognitionBiomimeticsPeer-reviewed
SonoNERFs: Neural Radiance Fields applied to Biological Echolocation Systems allow 3D Scene Reconstruction Through Perceptual Prediction
This paper introduces SonoNERFs, a method using Neural Radiance Fields to model bat echolocation and reconstruct 3D scenes from acoustic data.
3 citations - BioengineeringPLoS ONEPeer-reviewed
Delayed Center of Mass Feedback in Elderly Humans Leads to Greater Muscle Co-Contraction and Altered Balance Strategy under Perturbed Balance: a Predictive Musculoskeletal Simulation Study
Rachel Jones, Neethan Ratnakumar, Kübra Akbaş, Xianlian Alex Zhou
This study uses predictive musculoskeletal simulations to show that delayed center of mass feedback in elderly humans increases muscle co-contraction and alters balance strategies during perturbations.
- BioengineeringJournal of Neural EngineeringPeer-reviewed
Neuronal functional connectivity is impaired in a layer dependent manner near the chronically implanted microelectrodes
Keying Chen, Adam M. Forrest, Guillermo-Gonzalez Burgos, Takashi D.Y. Kozai
This study examines how chronic microelectrode implantation affects functional connectivity in different cortical layers and the hippocampus over 16 weeks, finding layer-specific impairments and altered interlaminar communication.
17 citations - Animal Behavior & CognitionPLoS ONEPeer-reviewed
Adapting genetic algorithms for artificial evolution of visual patterns under selection from wild predators
Emmanuelle S. Briolat, George R. A. Hancock, Jolyon T. Troscianko
This paper develops methods to evolve visual patterns under wild predator selection using genetic algorithms and demonstrates their feasibility in field experiments with birds.
- Animal Behavior & CognitionPLoS Computational BiologyPeer-reviewed
Marmosets mutually compensate for differences in rhythms when coordinating vigilance
Nikhil Phaniraj, Rahel Katharina Brügger, Judith Maria Burkart
This study shows marmosets adjust their vigilance rhythms to synchronize, demonstrating flexible and controllable coupling between pairs.
9 citations - BioengineeringFrontiers in NeurosciencePeer-reviewed
A sensorimotor enhanced neuromusculoskeletal model for simulating postural control of upright standing
Julian Shanbhag, Sophie Fleischmann, Iris Wechsler…·Jörg Miehling
This paper introduces a neuromusculoskeletal model for simulating upright standing postural control using sensor feedback, showing it can replicate physiological joint movements and reactive balance behavior.
12 citationstop 4% - Animal Behavior & CognitionbioRxivPreprint
Exploration-exploitation trade-off is regulated by metabolic state and taste value in Drosophila
Samuel C. Whitehead, Saumya Yashmohini Sahai, Jamie M. Stonemetz, Nilay Yapici
This study investigates how metabolic state and taste value influence exploration-exploitation trade-offs in Drosophila using a novel foraging assay.
4 citations - NeurosciencebioRxivPreprint
Task-specific topographic organization of neural activity in the primate lateral prefrontal cortex
Jinkang Derrick Xiang, Megan P. Roussy, Benjamin W. Corrigan…·Marieke Mur
This study examines how neural activity in the primate lateral prefrontal cortex is organized during different cognitive tasks, finding that task-related activity has a consistent spatial scaffold with task-specific reconfiguration.
- Animal Behavior & CognitionPLoS Computational BiologyPeer-reviewed
Visual social information use in collective foraging
David Mezey, Dominik Deffner, Ralf H. J. M. Kurvers, Paweł Romańczuk
This study presents an agent-based model to explore how individual decision-making based on personal and social information influences collective foraging outcomes in different environments.
21 citations