Author

A. Abate

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 2 Cancer Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

L. Liu· 2 shared A. C. Logan· 1 shared A. E. Perl· 1 shared A. Hsu· 1 shared A. J. Butte· 1 shared A. Koh· 1 shared A. Olshen· 1 shared A. P. Looney· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBioengineering

L. Liu

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Multiomic Single Cell Sequencing Identifies Stemlike Nature of Mixed Phenotype Acute Leukemia and Provides Novel Risk Stratification

C. A. C. Peretz, V. E. Kennedy, A. Walia, C. L. Delley, A. Koh, E. Tran, I. Clark, C. E. Hayford, C. D'Amato, Y. Xue, K. M. Fontanez, R. Roy, A. C. Logan, A. E. Perl, A. Abate, , C. C. Smith

The paper uses multiomic single-cell profiling to show MPAL blasts have a stem-like transcriptional profile linked to poor prognosis and develops a gene score for clinical risk stratification.

bioRxiv · May 15, 2023 · PreprintCancer Biology

Microbowls with controlled concavity for accurate microscale mass spectrometry

L. Xu, A. Abate

This paper introduces microbowls with controlled concavity to improve the accuracy and sensitivity of microscale mass spectrometry by concentrating analytes.

bioRxiv · Dec 2, 2021Bioengineering

High throughput gene expression profiling of yeast colonies with microgel-culture Drop-seq

L. Liu, C. Dalal, B. Heineike, A. Abate

This paper introduces ICO-seq, a method to profile gene expression in large numbers of yeast colonies, and applies it to study gene expression heterogeneity in engineered yeast strains.

bioRxiv · Sep 15, 2018Bioengineering

Reference-based annotation of single-cell transcriptomes identifies a profibrotic macrophage niche after tissue injury

D. Aran, A. P. Looney, L. Liu, V. Fong, A. Hsu, P. J. Wolters, A. Abate, A. J. Butte, M. Bhattacharya

The paper uses scRNA-seq to identify a profibrotic macrophage subtype in injured lung tissue, showing its role in fibrosis and potential as a therapeutic target.

bioRxiv · Mar 22, 2018Immunology