Author

I. Kim

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 2 Cell Biology· 2 Biophysics· 1 Ecology· 1 Pathology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 5 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Organism:human· 2 Organism:mouse· 2

Frequent Co-Authors

A. Ghosh· 2 shared O. Bar-Nur· 2 shared A. Bastiray· 1 shared A. Bonnefond· 1 shared A. Dubrow· 1 shared A. G. Clark· 1 shared A. Khamnis· 1 shared A. P. Macho· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 4 mutual co-author links

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2 shared papersBioengineering

A. Ghosh

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

Multiple genetic variants at the SLC30A8 locus affect local super-enhancer activity and influence pancreatic β cell survival and function

M. Hu, I. Kim, I. Moran, W. Peng, O. Sun, A. Bonnefond, A. Khamnis, S. Bonas-Guarch, P. Froguel, G. A. Rutter

The paper identifies multiple genetic variants at the SLC30A8 locus that influence enhancer activity and β cell function, with some variants affecting gene expression and insulin secretion.

bioRxiv · Jul 13, 2023 · PreprintCell Biology

A self-renewing biomimetic skeletal muscle construct engineered using induced myogenic progenitor cells

I. Kim, S. S. Lee, A. Ghosh, S. J. Ferguson, O. Bar-Nur

This paper develops a self-renewing biomimetic skeletal muscle construct using induced myogenic progenitor cells that recapitulates myogenic differentiation and repair.

bioRxiv · Apr 10, 2023Bioengineering

The Ralstonia pseudosolanacearum effector RipE1 is recognized at the plasma membrane by NbPtr1, Nicotiana benthamiana homolog of Pseudomonas tomato race 1.

B. Kim, I. Kim, W. Yu, H. Kim, Y. J. Ahn, K. H. Sohn, A. P. Macho, C. Segonzac

This study identifies NbPtr1 as the receptor recognizing the Ralstonia pseudosolanacearum effector RipE1 in Nicotiana benthamiana, showing membrane association and polymorphism in recognition.

bioRxiv · Mar 14, 2023 · PreprintPlant Biology

The energy landscape reshaped by strain-specific mutations underlies the long-range epistasis in NS1 evolution of influenza A virus

I. Kim, A. Dubrow, B. Zuniga, B. Zhao, N. Sherer, A. Bastiray, P. Li, J.-H. Cho

The paper investigates how strain-specific mutations in the NS1 protein of influenza A virus reshape the energy landscape, leading to long-range epistasis.

bioRxiv · May 30, 2022 · PreprintBiophysics

Integrative molecular roadmap for direct conversion of fibroblasts into myocytes and myogenic progenitor cells

I. Kim, A. Ghosh, N. Bundschuh, L. Hinte, F. von Meyenn, O. Bar-Nur

This study identifies distinct molecular trajectories in fibroblast reprogramming to myogenic progenitor cells versus myogenic transdifferentiation, highlighting Notch pathway activation as critical for iMPC formation.

bioRxiv · Aug 20, 2021Cell Biology

Distributed brain co-processor for tracking electrophysiology and behavior during electrical brain stimulation

V. Sladky, P. Nejedly, F. Mivalt, B. H. Brinkmann, I. Kim, E. K. St. Louis, N. M. Gregg, B. N. Lundstrom, C. M. Crowe, T. Pal Attia, D. Crepeau, I. Balzekas, V. Marks, L. P. Wheeler, J. Cimbalnik, , V. Kremen

The paper describes a distributed brain co-processor that integrates electrophysiology and behavioral tracking during electrical brain stimulation in humans and canines.

bioRxiv · Mar 8, 2021Bioengineering

Regeneration of a Full-Thickness Defect in Rotator Cuff Tendon with Umbilical Cord-Derived Mesenchymal Stem Cells in a Rat Model

J.-H. Yea, I. Kim, G. Sym, J.-K. Park, A.-Y. Lee, B. C. Cho, T. S. Bae, B. J. Kim, C. Jo

This study evaluates the efficacy of umbilical cord-derived mesenchymal stem cells (UC MSCs) in regenerating full-thickness rotator cuff defects in a rat model, showing improvements in macroscopic, histological, and biomechanical outcomes.

bioRxiv · Jun 12, 2020Pathology

Suppression gene drive in continuous space can result in unstable persistence of both drive and wild-type alleles

J. Champer, I. Kim, S. Champer, A. G. Clark, P. W. Messer

This study shows that suppression gene drives in spatial models can lead to unstable persistence of both drive and wild-type alleles due to chasing dynamics.

bioRxiv · Sep 14, 2019Ecology