B.-B. Liu

A phylogenomic approach, combined with morphological characters gleaned via machine learning, uncovers the hybrid origin and biogeographic diversification of the plum genus

This study combines phylogenomic and machine learning analyses to reveal hybrid origins and biogeographic diversification patterns in the plum genus.

Phylogenomic analyses support a new infrageneric classification of Pourthiaea (Maleae, Rosaceae) using multiple inference methods and extensive taxon sampling

This study uses phylogenomic analyses with extensive taxon sampling to propose a new infrageneric classification of Pourthiaea, finding cytonuclear discordance and hybridization as key factors.

Nightmare or delight: taxonomic circumscription meets reticulate evolution in the phylogenomic era

The paper investigates reticulate evolution in the genus Stranvaesia using phylogenomic data, revealing how hybridization and allopolyploidy influence taxonomic classification and leading to the description of a new genus.

Phylogenomic analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving the diversifications, with insights into the complex biogeographic history in the Northern Hemisphere

Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae

This study evaluates optimal sequencing depth for recovering single-copy nuclear genes from genome skimming data and shows deep genome skimming can effectively capture these genes alongside other genomic features.