C. Kaleta

This study shows that E. coli evolves specific genetic and phenotypic traits in an inflamed gut, leading to antibiotic collateral sensitivity and potential therapeutic implications.

This study examines microbiome assembly dynamics in C. elegans, showing increased gut-associated functions and enrichment of specific bacterial genera over the host's lifetime.

The paper tests growth interactions between closely related Bacteroides strains from mice and finds both positive and negative effects, with growth promotion more common than inhibition.

ALLCatchR, a machine learning classifier, accurately assigns B-precursor ALL samples to molecular subtypes and identifies developmental trajectories using RNA-Seq data.

This study shows that host selection drives initial bacterial colonization in Nematostella vectensis, while subsequent succession depends on bacterial metabolic interactions.

This study shows that microbial regulation of HK2 links mitochondrial metabolism and cell death in colitis, with butyrate protecting against inflammation by repressing HK2.

The study shows that metabolic dissimilarity between bacterial strains promotes cross-feeding interactions, as demonstrated through cocultivation experiments and in-silico analysis of gut microbiota.

The paper introduces CeMbio, a simplified natural microbiota for C. elegans, enabling causal studies of host-microbiome interactions through a resource with culturable strains and associated tools.

The paper analyzes the metabolic capabilities of the native microbiome of C. elegans and shows it can synthesize all essential nutrients for the nematode.

This study investigates how C. elegans responds to its native microbiome across development and adult life, identifying key molecular processes and regulatory mechanisms.