Author

H. Khalili

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 3

Signature Assays, Organisms & Methods

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Approach:deep learning· 3 Research Focus:differential expression· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Assay:proteomics· 2 Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

P. K. Gregersen· 2 shared A. Cesano· 1 shared A. J. Shih· 1 shared A. Tirard· 1 shared A.-C. Villani· 1 shared B. Arnold· 1 shared B. Diamond· 1 shared B. Li· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersImmunology

P. K. Gregersen

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3 papers

Recent·Most cited

Proteomic and single-cell transcriptomic dissection of human plasmacytoid dendritic cell response to influenza virus

M. H. Ghanem, A. J. Shih, H. Khalili, E. Werth, J. K. Chakrabarty, L. M. Brown, K. R. Simpfendorfer, P. K. Gregersen

The paper profiles the proteomic and single-cell transcriptomic responses of human plasmacytoid dendritic cells to influenza virus, revealing diverse secreted proteins and transcriptional fates.

bioRxiv · Nov 1, 2021Immunology

Altered interactions between circulating and tissue-resident CD8 T cells with the colonic mucosa define colitis associated with immune checkpoint inhibitors

M. Thomas, K. Slowikowski, K. Manakongtreecheep, P. Sen, J. Tantivit, M. Nasrallah, N. Smith, S. Ramesh, L. Zubiri, A. Tirard, B. Arnold, L. Nieman, J. Chen, T. Eisenhaure, K. Pelka, , A.-C. Villani

This study identifies altered interactions between circulating and tissue-resident CD8 T cells with the colonic mucosa in immune checkpoint inhibitor-associated colitis using single-cell RNA sequencing and other multi-omics approaches.

bioRxiv · Sep 17, 2021Immunology

A Systems Immunology Approach Identifies Cytokine-Induced STAT Signaling Pathways Critical to Rheumatoid Arthritis Disease Activity and Treatment Response

S. L. Bridges, J. Ptacek, R. E. Hawtin, D. Sun, B. Louie, E. Evensen, B. Mittleman, A. Cesano, G. Cavet, C. O. Bingham, S. S. Cofield, J. R. Curtis, M. I. Danila, C. Raman, R. Furie, , P. K. Gregersen

bioRxiv · Jul 8, 2019 · PreprintImmunology