Author

I. Zhang

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Biophysics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell type annotation· 2 Research Focus:ecology & biodiversity· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:clustering· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

A. R. Babbin· 2 shared J. D. Chodera· 2 shared L. E. Rosen· 2 shared A. Addetia· 1 shared A. Baker· 1 shared A. De Marco· 1 shared A. J. Greaney· 1 shared A. N. Goldberg· 1 shared

Activity by Year

2021-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersMicrobiology

A. R. Babbin

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Identifying and overcoming the sampling challenges in relative binding free energy calculations of a model protein:protein complex

I. Zhang, D. A. Rufa, I. Pulido, M. M. Henry, L. E. Rosen, K. Hauser, S. Singh, J. D. Chodera

This study identifies sampling challenges in protein:protein binding free energy calculations and demonstrates how to overcome them using alchemical methods and long simulations.

bioRxiv · Mar 7, 2023Biophysics

Sinking diatom aggregates provide carbon to drive microscale denitrification in a bulk oxygenated ocean

D. Ciccarese, O. Tantawi, I. Zhang, D. Plata, A. R. Babbin

The paper demonstrates that sinking diatom aggregates can support denitrification in oxygenated ocean water, forming nitrite maxima through anoxic microsites.

bioRxiv · Sep 26, 2022 · PreprintMicrobiology

Porous marine snow differentially benefits chemotactic, motile, and non-motile bacteria

B. Borer, I. Zhang, A. Baker, G. A. O'Toole, A. R. Babbin

This study shows that bacterial motility is essential for colonizing marine particles, while chemotaxis benefits at higher settling velocities, and non-motile bacteria disproportionately benefit from porous particle structures.

bioRxiv · May 13, 2022Microbiology

IL-13-programmed airway tuft cells produce PGE2, which promotes CFTR-dependent mucociliary function

M. E. Kotas, C. M. Moore, J. G. Gurrola, S. D. Pletcher, A. N. Goldberg, R. Alvarez, S. Yamato, P. E. Bratcher, C. A. Shaughnessy, P. L. Zeitlin, I. Zhang, Y. Li, M. T. Montgomery, K. Lee, E. K. Cope, , E. D. Gordon

The paper identifies IL-13-programmed airway tuft cells that produce PGE2, which enhances CFTR-dependent mucociliary function in allergic airways.

bioRxiv · May 11, 2022Immunology

Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape

T. N. Starr, N. Czudnochowski, F. Zatta, Y.-J. Park, Z. Liu, A. Addetia, D. Pinto, M. Beltramello, P. Hernandez, A. J. Greaney, R. Marzi, W. G. Glass, I. Zhang, A. S. Dingens, J. E. Bowen, , Veesler

This study identifies antibodies against SARS-CoV-2 that balance neutralization potency and breadth, with some showing high resistance to viral escape.

bioRxiv · Apr 6, 2021 · PreprintMicrobiology