Author

J. Evans

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Ecology· 1 Evolutionary Biology· 1 Immunology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Approach:experimental assay· 4 Organism:human· 4 Assay:metagenomics· 3 Assay:whole-genome sequencing· 3 Research Focus:differential expression· 2 Research Focus:ecology & biodiversity· 2 Research Focus:host-pathogen & immune response· 2

Frequent Co-Authors

A. Pekosz· 2 shared C. I. Kothe· 2 shared H. Liu· 2 shared K. Shaw-Saliba· 2 shared M. Lewis· 2 shared P. Thielen· 2 shared R. Rothman· 2 shared T. Mehoke· 2 shared

Activity by Year

2020-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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2 shared papersMicrobiology

A. Pekosz

Mutual co-authors in cluster

Author profile →

9 papers

Recent·Most cited

Urbanization as an environmental filter for megacolorful birds

L. F. d. Nascimento, P. R. Guimaraes, J. Evans, W. D. Kissling

The paper examines how urbanization affects plumage colorfulness in tropical birds, finding that megacolorful species are less common in highly urbanized areas.

bioRxiv · Jun 24, 2024 · PreprintEcology

MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics

E. B. Caffrey, M. R. Olm, C. I. Kothe, J. Evans, J. L. Sonnenburg

MiFoDB is a metagenomics workflow that identifies microbes in fermented foods with high taxonomic resolution, enabling strain tracking and functional analysis.

bioRxiv · Mar 29, 2024 · PreprintMicrobiology

Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation

C. I. Kothe, C. Caroe, F. Mazel, D. Zilber, P. Cruz-Morales, N. Mohellibi, J. Evans

This study analyzes the microbial ecology of novel miso varieties made from different substrates, finding that substrate and geography strongly influence microbial composition and gene presence.

bioRxiv · Feb 28, 2024Microbiology

Evolutionarily diverse origins of honey bee deformed wing viruses

N. Hasegawa, M. Techer, M. al-Hissnawi, N. Adjlane, K. Antunez, A. Beaurepaire, K. Christmon, H. Delatte, U. Dukku, N. Eliash, M. El-Niweir, O. Esnault, J. Evans, N. Haddad, B. Locke, , A. Mikheyev

This study reconstructs the origins and spread of Deformed Wing Viruses in honey bees using phylogeographic analysis, revealing distinct evolutionary paths for DWV-A and DWV-B.

bioRxiv · Jan 21, 2023 · PreprintEvolutionary Biology

Prime-pull immunization of mice with a BcfA-adjuvanted vaccine elicits mucosal immunity and prevents SARS CoV-2 infection and pathology

M. M. Shamseldin, A. Zani, A. Kenney, J. Evans, C. Zeng, K. A. Read, K. Caution, J. M. Hall, J. M. Brown, G. Gunsch, K. N. Corps, S. Chaitwatponsakom, M. KC, M. Lu, R. Deora, , P. Dubey

bioRxiv · Apr 6, 2022 · PreprintImmunology

The dynamic interaction of systemic inflammation and the hypothalamic-pituitary-adrenal (HPA) axis during and after major surgery

D. Galvis, E. Zavala, J. J. Walker, T. Upton, S. L. Lightman, G. D. Angelini, J. Evans, C. A. Rogers, K. Phillips, B. Gibbison

This study examines how systemic inflammation and the HPA axis respond during and after major surgery, identifying three cortisol response phenotypes and their clinical implications.

bioRxiv · Aug 16, 2021Physiology

Prophage-dependent recombination drives genome structural variation and phenotypic heterogeneity in Escherichia coli O157:H7

S. Fitzgerald, N. Lupolova, S. Shaaban, T. J. Dallman, D. Greig, L. Allison, S. C. Tongue, J. Evans, M. K. Henry, T. N. McNeilly, J. L. Bono, D. L. Gally

This paper shows that prophage-dependent recombination generates structural variants in E. coli O157, leading to phenotypic heterogeneity and adaptation.

bioRxiv · Dec 2, 2020 · PreprintMicrobiology

Identification of H3N2 NA and PB1-F2 genetic variants and their association with disease symptoms in the 2014-15 influenza season

D. Blumenkrantz, T. Mehoke, J. Hardick, K. Shaw-Saliba, H. Powell, N. Wohlgemuth, H. Liu, E. Macias, J. Evans, M. Lewis, R. Medina, L. M. Sauer, A. Dugas, A. DuVal, A. P. Lane, , A. Pekosz

The paper identifies H3N2 NA and PB1-F2 genetic variants and links their presence to increased cough and shortness of breath in patients during the 2014-15 influenza season.

bioRxiv · Feb 20, 2020Microbiology

Differential Disease Severity and Whole Genome Sequence Analysis for Human Influenza A/H1N1pdm Virus in 2015-2016 Influenza Season

H. Liu, Y.-N. Gong, K. Shaw-Saliba, T. Mehoke, J. Evans, Z.-Y. Liu, M. Lewis, L. Sauer, P. Thielen, R. Rothman, K.-F. Chen, A. Pekosz

The paper analyzes whole genome sequences of H1N1pdm viruses from 2015-2016 to compare disease severity between Baltimore and Taiwan, finding 6B.2 viruses associated with more severe symptoms in Taiwan.

bioRxiv · Feb 20, 2020 · PreprintMicrobiology