Author

K. Fujimoto

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4 Bioengineering· 2 Evolutionary Biology· 1 Physiology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:human· 4 Approach:statistical model· 4 Research Focus:host-pathogen & immune response· 3 Research Focus:cell signaling & trafficking· 2 Assay:electrophysiology· 2 Organism:bacteria (other)· 1 Approach:biophysical modeling· 1

Frequent Co-Authors

A. Brown· 1 shared A. Nazarian· 1 shared A. Nummenmaa· 1 shared A. Prokop· 1 shared A. S. Nishino· 1 shared A. Senoo· 1 shared B. G. Bunney· 1 shared C. Reist· 1 shared

Activity by Year

2019-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 5 mutual co-author links

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1 shared paperEvolutionary Biology

A. Brown

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Author profile →

9 papers

Recent·Most cited

Isogenic iPSC-derived proximal and distal lung-on-chip models: Tissue- and virus-specific immune responses in human lungs

S. Yadav, K. Fujimoto, T. Takenaga, S. Takahashi, Y. Muramoto, R. Mikawa, T. Noda, S. Gotoh, R. Yokokawa

The paper develops isogenic lung-on-chip models from iPSC-derived cells to study tissue-specific immune responses to SARS-CoV-2 and Influenza viruses.

bioRxiv · Nov 24, 2023 · PreprintBioengineering

Pulsation waves along the Ciona heart tube reverse by bimodal rhythms expressed by a remote pair of pacemakers

Y. Fujikake, K. Fukuda, K. Matsushita, Y. Iwatani, K. Fujimoto, A. S. Nishino

The paper investigates how pulsation waves in the Ciona heart tube reverse due to bimodal rhythms from terminal pacemakers.

bioRxiv · Oct 6, 2023 · PreprintPhysiology

An In-Silico Testbed for Fast and Accurate MR Labeling of Orthopaedic Implants

G. M. Noetscher, P. J. Serano, M. Horner, A. Prokop, J. Hanson, K. Fujimoto, J. E. Brown, A. Nazarian, J. Ackerman, S. N. Makaroff

The paper presents an in-silico testbed for MR labeling of orthopaedic implants, approved by FDA as a medical device development tool for 1.5 T examinations.

bioRxiv · Jul 16, 2023 · PreprintBiophysics

Diffusive mediator feedback explains the health-to disease transition of skin inflammation

M. Sudo, K. Fujimoto

This paper uses a reaction-diffusion model to explain how imbalanced pro- and anti-inflammatory mediator feedback drives different patterns of skin inflammation and proposes treatment strategies based on erythema patterns.

bioRxiv · May 28, 2023 · PreprintBiophysics

Single-molecule tracking of Nanog and Oct4 in mouse embryonic stem cells

K. Okamoto, H. Fujita, Y. Okada, S. Onami, S. Shinkai, K. Abe, K. Fujimoto, T. M. Watanabe

The paper tracks Nanog and Oct4 in mouse embryonic stem cells to study their roles in pluripotency, finding that Nanog interacts longer with targets during differentiation, suggesting a feedback mechanism.

bioRxiv · Aug 8, 2022 · PreprintBiophysics

Phylogeny and Metadata Network Database for Epidemiologic Surveillance

G. L. Stott, L. Lyu, G. Veytsel, J. Kuo, R. Lewis, A. Brown, K. Fujimoto, J. Bahl

The paper creates a graph database to integrate SARS-CoV-2 phylogenetic trees, metadata, and surveillance data for phylodynamic analysis.

bioRxiv · Apr 19, 2022 · PreprintEvolutionary Biology

Lipid nanodiscs facilitate the identification of a fragment compound inhibiting the enzymatic activity of the bacterial membrane protein MsbA.

K. Fujimoto, A. Senoo, S. Nagatoishi, T. Ueda, K. Tsumoto, J. Caaveiro

This study uses lipid nanodiscs and surface plasmon resonance to identify a fragment compound that inhibits MsbA's ATPase activity, suggesting a pathway for developing stronger inhibitors.

bioRxiv · Jun 15, 2021 · PreprintBiophysics

A Software Toolkit for TMS Electric-Field Modeling with Boundary Element Fast Multipole Method: An Efficient MATLAB Implementation

S. N. Makarov, W. A. Wartman, M. Daneshzand, K. Fujimoto, T. Raij, A. Nummenmaa

The paper introduces a MATLAB-based software toolkit for TMS electric-field modeling using BEM-FMM, achieving threefold faster computation with similar accuracy.

bioRxiv · Feb 9, 2020Bioengineering

A study of psychological pain in substance use disorder and its relationship to treatment outcome

S. Mee, B. G. Bunney, K. Fujimoto, J. Penner, G. Seward, W. E. Bunney, C. Reist

This study examines psychological pain in substance use disorder patients, finding it correlates with treatment retention and dropout rates.

bioRxiv · Apr 18, 2019Scientific Communication & Education