Author

K. Ide

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 4 Bioengineering· 1 Cell Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 6 Research Focus:cell type annotation· 5 Organism:mouse· 4 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Assay:scRNA-seq· 3 Research Focus:clustering· 2 Approach:deep learning· 2

Frequent Co-Authors

M. Hosokawa· 5 shared M. Kogawa· 5 shared H. Takeyama· 4 shared Y. Nishikawa· 3 shared K. Yura· 2 shared R. Miyaoka· 2 shared A. Matsuhashi· 1 shared A. Matsushita· 1 shared

Activity by Year

2019-2024 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

5 shared papersMicrobiology

M. Hosokawa

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

A combination of two-enzyme system and enzyme engineering improved the activity of a new PET hydrolase identified from soil bacterial genome

H. Mabashi-Asazuma, M. Hirai, S. Sakurai, K. Ide, M. Kogawa, A. Matsushita, M. Hosokawa, S. Tsuda

The paper identifies a novel PET hydrolase from soil bacteria, enhances its activity with CALB and protein engineering, achieving 95.5% PET degradation.

bioRxiv · Feb 1, 2024Bioengineering

Targeted single-cell genomics reveals novel host adaptation strategies of the symbiotic bacteria Endozoicomonas in Acropora tenuis coral

K. Ide, Y. Nishikawa, T. Maruyama, Y. Tsukada, M. Kogawa, H. Takeda, R. Wagatsuma, R. Miyaoka, Y. Nakano, K. Kinjo, M. Ito, M. Hosokawa, K. Yura, S. Suda, H. Takeyama

This study uses single-cell genomics to analyze Endozoicomonas bacteria in Acropora tenuis corals, revealing host-adaptive genes that may enhance coral stress tolerance.

bioRxiv · Apr 22, 2022Microbiology

Single-cell metabolite detection and genomics reveals uncultivated talented producer

M. Kogawa, R. Miyaoka, F. Hemmerling, M. Ando, K. Yura, K. Ide, Y. Nishikawa, M. Hosokawa, Y. Ise, J. K. B. Cahn, K. Takada, S. Matsunaga, T. Mori, J. Piel, H. Takeyama

This study identifies an uncultivated bacterium as a producer of antifungal metabolites using Raman microscopy and single-cell sequencing in a sponge microbiome.

bioRxiv · Sep 11, 2021Microbiology

Ferroptotic stress promotes the accumulation of pro-inflammatory proximal tubular cells in maladaptive renal repair

S. Ide, Y. Kobayashi, K. Ide, S. A. Strausser, S. Herbek, L. L. O'Brien, S. D. Crowley, L. Barisoni, A. Tata, P. R. Tata, T. Souma

The paper shows that ferroptotic stress promotes the accumulation of pro-inflammatory proximal tubular cells, contributing to maladaptive renal repair after severe injury.

bioRxiv · Mar 23, 2021Cell Biology

Development of a humanized mouse model to analyze antibodies specific for human leukocyte antigen (HLA)

S. Yanagawa, H. Tahara, T. Shirouzu, S. Kawai, Y. Tanaka, K. Ide, S. Akimoto, H. Ohdan

This paper develops a humanized mouse model to study anti-HLA antibody production, finding that allo-specific antibodies are suppressed while non-allo-specific antibodies are detectable.

PLOS ONE · Feb 5, 2021Peer-reviewedImmunology

Recovery of high-quality assembled genomes via metagenome binning guided with single-cell amplified genomes

K. Arikawa, K. Ide, M. Kogawa, T. Saeki, T. Yoda, T. Endoh, A. Matsuhashi, H. Takeyama, M. Hosokawa

This paper introduces MetaSAG, a method using single-cell genomes to improve metagenome binning, resulting in higher quality and strain-resolved microbial genomes from complex communities.

bioRxiv · Jan 11, 2021 · PreprintMicrobiology

Single-cell genomics of uncultured bacteria reveals dietary fiber responders in the mouse gut microbiota

R. Chijiiwa, M. Hosokawa, M. Kogawa, Y. Nishikawa, K. Ide, C. Sakanashi, K. Takahashi, H. Takeyama

This study develops a single-cell genomic sequencing technique to identify bacterial responders to dietary fiber in the mouse gut microbiota, revealing metabolic pathways and functional lineages involved in fiber fermentation.

bioRxiv · Dec 9, 2019Microbiology