M. Hosokawa

The paper presents a dataset of single amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) from the human microbiome, revealing microbial diversity, mobile genetic elements, and antibiotic resistance gene dynamics.

The paper traces the propagation path of the Somei-Yoshino cherry cultivar by identifying somatic mutations across 46 clones and clustering them into genetic groups.

The paper uses microbial single-cell genome sequencing to discover novel endolysins against methicillin-resistant Staphylococcus aureus, identifying a lead endolysin with effective antimicrobial properties.

The paper identifies a male-killing-associated bacteriophage WO in Wolbachia strains of Homona magnanima and proposes a mechanism for male-killing evolution.

This study uses single-cell genomics to analyze Endozoicomonas bacteria in Acropora tenuis corals, revealing host-adaptive genes that may enhance coral stress tolerance.

This study identifies a novel chalcone reductase gene (DvCHR) in dahlia involved in isoliquiritigenin biosynthesis, showing evolutionary divergence from legume CHR genes.

This study develops a single-cell long-read sequencing workflow to generate complete bacterial genomes from uncultured human gut bacteria, revealing structural diversity and phage insertions within species.

This study identifies an uncultivated bacterium as a producer of antifungal metabolites using Raman microscopy and single-cell sequencing in a sponge microbiome.

The paper identifies two cancer stem cell-like populations in TNBC xenografts using transcriptomic analysis and confirms their presence in patient data, suggesting potential as biomarkers and implications for drug resistance.

This paper introduces MetaSAG, a method using single-cell genomes to improve metagenome binning, resulting in higher quality and strain-resolved microbial genomes from complex communities.

This study develops a single-cell genomic sequencing technique to identify bacterial responders to dietary fiber in the mouse gut microbiota, revealing metabolic pathways and functional lineages involved in fiber fermentation.

The paper uses time-lapse single-cell transcriptomics to show histone H3 gene expression fluctuation is crucial for breaking dormancy in fission yeast spores.