Author

M. A. Haniffa

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 3 Cell Biology· 2

Signature Assays, Organisms & Methods

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Organism:human· 5 Research Focus:cell type annotation· 3 Research Focus:cell-cell communication· 2 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Assay:imaging· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2

Frequent Co-Authors

A. Di Re· 2 shared A. N. Harman· 2 shared E. Dann· 2 shared E. Patrick· 2 shared E. Stephenson· 2 shared G. Ctercteko· 2 shared H. Baharlou· 2 shared J. Engelbert· 2 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersImmunology

A. Di Re

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

A spatial human thymus cell atlas mapped to a continuous tissue axis

N. Yayon, V. R. Kedlian, L. Boehme, C. Suo, B. Wachter, R. T. Beuschel, O. Amsalem, K. Polanski, S. Koplev, E. Tuck, E. Dann, J. Van Hulle, S. Perera, T. Putteman, A. V. Predeus, , Tag

The paper maps the spatial organization of the human thymus across developmental stages using a multimodal atlas and identifies key cellular and molecular features of T cell development.

bioRxiv · Oct 25, 2023Immunology

An in situ quantitative map of initial human colorectal HIV transmission

H. Baharlou, N. P. Canete, E. E. Vine, k. hu, D. Yuan, K. J. Sandgren, K. M. Bertram, `Najla Nasr, J. W. Rhodes, M. Gosselink, A. Di Re, F. Reza, G. Ctercteko, N. ` Pathma-Nathan, G. Collins, , A. N. Harman

This study quantifies HIV transmission dynamics in human colorectal tissue, showing HIV localizes to mucosal dendritic cells and submucosal macrophages rather than CD4+ T-cells.

bioRxiv · Apr 30, 2022Immunology

Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas

K. Borner, S. A. Teichmann, E. M. Quardokus, J. Gee, K. Browne, D. Osumi-Sutherland, B. W. Herr, A. Bueckle, H. Paul, M. A. Haniffa, L. Jardine, A. Bernard, S.-L. Ding, J. A. Miller, S. Lin, , G. Weber

The paper reviews efforts to create human anatomical structures, cell types, and biomarkers tables and 3D reference organs to support a Human Reference Atlas, with use cases showing their utility in biomedical research.

bioRxiv · May 31, 2021Cell Biology

Cells of the human intestinal tract mapped across space and time

R. Elmentaite, N. Kumasaka, H. W. King, K. Roberts, M. Dabrowska, S. Pritchard, L. Bolt, S. F. Vieira, L. Mamanova, N. Huang, I. Goh Kai'En, E. Stephenson, J. Engelbert, R. A. Botting, A. Fleming, , S. A. Teichmann

The paper maps human intestinal cell lineages across development and disease, identifying new cell types and functions related to inflammation and immunity.

bioRxiv · Apr 7, 2021Cell Biology

Identification of HIV-Transmitting Sub-Epithelial Mononuclear Phagocytes in Human Anogenital and Colorectal Tissues

J. W. Rhodes, R. A. Botting, K. M. Bertram, H. Rana, H. Baharlou, E. E. Longmuir-Vine, P. Vegh, J. Fletcher, T. R. O'Neil, G. P. Parnell, D. Graham, N. Nasr, J. J. K. Lim, L. Barnouti, P. Haertsch, , A. N. Harman

This study identifies two sub-epithelial mononuclear phagocyte subsets that preferentially uptake and transmit HIV to CD4 T cells in anogenital and colorectal tissues.

bioRxiv · May 26, 2020 · PreprintImmunology