Author
S. Matsuoka
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2018-2023 · peak 6/yrCo-Author Collaboration Network
10 top collaborators · 24 mutual co-author links15 papers
Recent·Most cited
- MicrobiologybioRxiv
SARS-CoV-2 ORF8 is a viral cytokine regulating immune responses
M. Kohyama, T. Suzuki, W. Nakai…·H. Arase
This study shows that SARS-CoV-2 ORF8 protein acts as a cytokine that promotes lung inflammation and immune dysregulation in COVID-19, suggesting it as a potential therapeutic target.
DOI 10.1093/intimm/dxac044 - MicrobiologybioRxiv
Influence of DNA extraction kits on freshwater fungal DNA metabarcoding
S. Matsuoka, Y. Sugiyama, M. Nagano, H. Doi
This study evaluates the impact of DNA extraction kits on fungal DNA metabarcoding using freshwater samples, finding no significant differences in OTU counts or composition between kits.
DOI 10.7717/peerj.13477 - MicrobiologybioRxivPreprint
The SARS-CoV-2 Delta variant is poised to acquire complete resistance to wild-type spike vaccines
Y. Liu, N. Arase, J.-i. Kishikawa…·H. Arase
The paper shows the Delta variant can escape NTD antibodies and gain infectivity when specific RBD mutations are present, suggesting the need for updated vaccines.
DOI 10.1101/2021.08.22.457114 - EcologybioRxivPreprint
Estimation of biodiversity metrics by environmental DNA metabarcoding compared with visual and capture surveys of river fish communities
H. Doi, R. Inui, S. Matsuoka…·T. Kono
This study compares eDNA metabarcoding with visual and capture surveys to estimate alpha and gamma diversity in river fish communities, finding eDNA detects more species and provides broader regional insights.
DOI 10.1101/617670 - MicrobiologybioRxiv
An infectivity-enhancing site on the SARS-CoV-2 spike protein is targeted by COVID-19 patient antibodies
Y. Liu, W. T. Soh, A. Tada…·H. Arase
This study identifies an NTD site on SARS-CoV-2 spike protein that enhances infectivity when targeted by antibodies, and finds these antibodies are present in hospitalized patients and some uninfected donors.
DOI 10.1016/j.cell.2021.05.032 - EcologybioRxiv
Evaluation of seasonal dynamics of fungal DNA assemblages in a flow-regulated stream in a restored forest using eDNA metabarcoding
S. Matsuoka, Y. Sugiyama, Y. Shimono…·H. Doi
This study uses eDNA metabarcoding to detect seasonal fungal community dynamics in a forest stream over two years, finding regular annual periodicity and variation among functional groups.
DOI 10.1111/1462-2920.15669 - EcologybioRxivPreprint
Effects of species traits and ecosystem characteristics on species detection by eDNA metabarcoding in lake fish communities
H. Doi, S. Matsuoka, S.-i. S. Matsuzaki…·M. Miya
This study evaluates how species traits and ecosystem characteristics affect eDNA detection rates in lake fish communities across Japan.
DOI 10.1101/2020.09.25.314336 - EcologybioRxiv
Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
R. Nakao, R. Inui, Y. Akamatsu…·H. Doi
The paper compares the performance of Illumina iSeq 100 and MiSeq in fish eDNA metabarcoding, finding similar species detection but differences in species count.
DOI 10.1038/s41598-021-95360-5 - EcologybioRxivPreprint
Prolonged impacts of past agriculture and overgrazing on soil fungal communities in restored forests
S. Tatsumi, S. Matsuoka, S. Fujii…·A. S. Mori
The paper examines how past agriculture and overgrazing affect soil fungal communities in restored forests, finding that fungal diversity is higher in reforested sites but community structure is more homogenized.
DOI 10.1101/2020.05.09.086025 - EcologybioRxiv
Describing macroecological patterns in microbes: Approaches for comparative analyses of operational taxonomic unit read number distribution with a case study of global oceanic bacteria
R. Nakadai, Y. Okazaki, S. Matsuoka
This paper compares operational taxonomic unit read number distributions (ORDs) with species abundance distributions (SADs) in microbial communities, finding shared and distinct patterns in global oceanic bacteria.
DOI 10.1002/edn3.78 - EcologybioRxiv
Evaluation of host effects on ectomycorrhizal fungal community compositions in a forest landscape in northern Japan
S. Matsuoka, Y. Sugiyama, R. Tateno…·T. Osono
The paper evaluates how host species influence ectomycorrhizal fungal community compositions in a forest landscape, finding host preference is a primary determinant.
DOI 10.1098/rsos.191952 - EcologybioRxiv
Spatial structures of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan
S. Matsuoka, Y. Sugiyama, H. Sato…·H. Doi
The paper investigates fungal DNA assemblages in river water using eDNA metabarcoding and finds they are more similar within than between branches and more similar between closer branches.
DOI 10.3897/mbmg.3.36335 - EcologybioRxiv
Biogeographic patterns of ectomycorrhizal fungal communities associated with Castanopsis sieboldii across the Japanese archipelago
S. Matsuoka, T. Iwasaki, Y. Sugiyama…·T. Osono
The paper examines biogeographic patterns of ectomycorrhizal fungal communities associated with Castanopsis sieboldii across Japan, finding that host genotypes influence these patterns, though climatic and spatial factors have greater explanatory power.
DOI 10.3389/fmicb.2019.02656 - Cell BiologybioRxiv
Excitable dynamics of Ras triggers self-organized PIP3 signaling for spontaneous cell migration
S. Fukushima, S. Matsuoka, M. Ueda
The paper shows Ras-GTP excitation drives self-organized PIP3 signaling waves that enable spontaneous cell migration without external cues.
DOI 10.1242/jcs.224121