Author

A. Saeed

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 2 Biochemistry· 1 Cancer Biology· 1 Evolutionary Biology· 1 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 4 Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Assay:proteomics· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

M. Dalby· 2 shared N. Gadegaard· 2 shared P. Reynolds· 2 shared A. Ahmad· 1 shared A. Amin· 1 shared A. Balan· 1 shared A. C. Amado· 1 shared A. Elhassan· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 5 mutual co-author links

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2 shared papersBioengineering

M. Dalby

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

The rural urban divide, insights from immuno-genetic profiles and implications for health

R. Hamad, N. A. Eid, A. Saeed, S. A. E. Abuswar, A. Hussain, K. Rockett, D. Kwiatkowski, M. Ibrahim, I. Elhassan, A. Elhassan

The paper analyzes genotype and gene expression differences between rural and urban populations in eastern Sudan, finding higher cytokine expression and genetic variation in rural samples linked to health disparities.

bioRxiv · Sep 8, 2023Immunology

SpliceMutr enables pan-cancer analysis of splicing-derived neoantigen burden in tumors

T. Palmer, M. D. Kessler, X. M. Shao, A. Balan, M. Yarchoan, N. Zaidi, T. Y. Lopez-Vidal, A. Saeed, J. Gore, N. Azad, E. Jaffee, A. V. Favorov, V. Anagnostou, R. Karchin, D. Gaykalova, , E. J. Fertig

SpliceMutr quantifies splicing-derived neoantigens across cancers, finding correlations with immune biomarkers and treatment response.

bioRxiv · May 26, 2023Cancer Biology

Microevolution and phylogenomic characterization with perspectives in the 2022-2023 outbreak of child Respiratory Syncytial Virus type A

S. Majaz, A. Ahmad, A. Saeed, S. Noreen, F. Nouroz, Y. Xie, A. Amin

This study analyzes RSV type A mutations and phylogenetic patterns from global outbreaks to inform epidemiological control and drug development.

bioRxiv · Jan 28, 2023 · PreprintEvolutionary Biology

Addressing Structural Mentoring Barriers in Postdoctoral Training: A Qualitative Study

W. M. Lambert, N. Nana, S. Afonja, A. Saeed, A. C. Amado, L. M. Golightly

This study identifies structural mentoring barriers faced by postdoctoral trainees and recommends institutional interventions to improve mentorship and career outcomes.

bioRxiv · Aug 20, 2022Scientific Communication & Education

Structural and Functional Characterization of Novel Phosphotyrosine Phosphatase Protein from Drosophila Melanogaster (Pupal Retina)

R. Naz, A. Iqbal, A. Saeed, A. Khan, M. Shutaywi, N. VRINCEANU, A. L. Cioca

The paper identifies and characterizes a novel phosphotyrosine phosphatase from Drosophila melanogaster, presenting its 3D structure and inhibitor binding features.

bioRxiv · Feb 19, 2022Biochemistry

Virome-wide serological profiling reveals association of herpesviruses with obesity

M. R. Hasan, M. Rahman, T. Khan, A. Saeed, S. Sundararaju, A. Flores, P. Hawken, A. Rawat, N. Elkum, K. Hussain, R. Tan, P. Tang, N. Marr

This study uses ViScan to find HSV-1 and Rhinovirus A associations with obesity in Qatari adults, but not children.

bioRxiv · Sep 2, 2020Microbiology

Customizable, engineered substrates for rapid screening of cellular cues

E. Huethorst, M. Cutiongco, F. Campbell, A. Saeed, R. Love, P. Reynolds, M. Dalby, N. Gadegaard

The paper introduces a customizable multiwell array for high-throughput screening of biophysical cues, demonstrating its effectiveness in assessing cell responses to topography and rigidity.

bioRxiv · Jul 5, 2019Bioengineering

Nanotopography reveals metabolites that maintain the immunosuppressive phenotype of mesenchymal stem cells

E. Ross, L.-A. Turner, A. Saeed, K. Burgess, G. Blackburn, P. Reynolds, J. Wells, J. Mountford, N. Gadegaard, M. Salmeron-Sanchez, R. Oreffo, M. Dalby

This study shows nanotopography can control MSC immunomodulatory capacity by modulating intracellular tension and oxidative glycolysis, and identifies bioactive metabolites that influence MSC function.

bioRxiv · Apr 29, 2019 · PreprintBioengineering