The endoplasmic reticulum adopts two distinct tubule forms
Abstract
The endoplasmic reticulum (ER) is a versatile organelle with diverse functions. Through super-resolution microscopy, we show that the peripheral ER in the mammalian cell adopts two distinct forms of tubules. Whereas an ultrathin form, R1, is consistently covered by ER-membrane curvature-promoting proteins, e.g., Rtn4 in the native cell, in the second form, R2, Rtn4 and analogs are arranged into two parallel lines at a conserved separation of [~]105 nm over long ranges. The two tubule forms together account for [~]90% of the total tubule length in the cell, with either one being dominant in different cell types. The R1-R2 dichotomy and the final tubule geometry are both co-regulated by Rtn4 (and analogs) and the ER sheet-maintaining protein Climp63, which respectively define the edge curvature and lumen height of the R2 tubules to generate a ribbon-like structure of well-defined width. Accordingly, the R2 tubule width correlates positively with the Climp63 intralumenal size. The R1 and R2 tubules undergo active remodeling at the second/sub-second time scales as they differently accommodate proteins, with the former effectively excluding ER-luminal proteins and ER-membrane proteins with large intraluminal domains. We thus uncover a dynamic structural dichotomy for ER tubules with intriguing functional implications.
02 /Specification & Classification
Click any tag to browse matching papersReproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- The nanoscale organization of reticulon 4 shapes local endoplasmic reticulum structure in situ
L. A. Fuentes, Z. Marin, … J. Bewersdorf·bioRxiv·Jan 26, 2023
- Nano-scale size holes in ER sheets provide an alternative to tubules for highly-curved membranes
Lena K. Schroeder, Andrew E. S. Barentine, … Shirin Bahmanyar·bioRxiv·Sep 20, 2017
- Network Organisation and the Dynamics of Tubules in the Endoplasmic Reticulum
H. Perkins, P. Ducluzaux, … T. A. Waigh·bioRxiv·Mar 11, 2020
- Reticulon and CLIMP-63 regulate nanodomain organization of peripheral ER tubules
G. Gao, C. Zhu, … I. R. Nabi·bioRxiv·May 30, 2019
- The Endoplasmic Reticulum as an Active Liquid Network
Zubenelgenubi C. Scott, Samuel B. Steen, … Elena F. Koslover·Proceedings of the National Academy of SciencesPeer-reviewed·Oct 11, 2024
- nERdy: network analysis of endoplasmic reticulum dynamics
Ashwin Samudre, Guang Gao, … Ghassan Hamarneh·Communications BiologyPeer-reviewed·Nov 5, 2025