Author

Z. Marin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 5 Cell Biology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:fluorescence / live-cell microscopy· 5 Approach:experimental assay· 3 Assay:imaging· 3 Research Focus:software / tool· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:deep learning· 2

Frequent Co-Authors

D. Baddeley· 4 shared J. Bewersdorf· 3 shared L. A. Fuentes· 3 shared X. Wang· 3 shared A. E. S. Barentine· 2 shared B. Chen· 2 shared C. McFadden· 2 shared D. Mehra· 2 shared

Activity by Year

2020-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersBiophysics

D. Baddeley

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Mechanically Sheared Axially Swept Light-Sheet Microscopy

J. Lin, D. Mehra, Z. Marin, X. Wang, H. M. Borges, Q. Shen, S. Galecki, J. Haug, K. M. Dean

The paper introduces a new image acquisition method for light-sheet microscopes that improves spatial context placement and reduces post-processing needs, achieving higher field of view and resolution.

bioRxiv · Apr 10, 2024Biophysics

Adaptive Optics in an Oblique Plane Microscope

C. McFadden, Z. Marin, B. Chen, S. Daetwyler, X. Wang, D. Rajendran, R. P. Fiolka

This paper demonstrates adaptive optics in an oblique plane microscope, improving resolution and signal strength in zebrafish embryos.

bioRxiv · Mar 21, 2024Cell Biology

navigate: an open-source platform for smart light-sheet microscopy.

Z. Marin, X. Wang, D. W. Collison, C. McFadden, J. Lin, H. Borges, B. Chen, D. Mehra, Q. Shen, S. Galecki, S. Daetwyler, R. P. Fiolka, K. M. Dean

navigate provides an open-source platform for smart light-sheet microscopy, enabling automated and user-friendly LSFM workflows without requiring specialized expertise.

bioRxiv · Feb 9, 2024Biophysics

The nanoscale organization of reticulon 4 shapes local endoplasmic reticulum structure in situ

L. A. Fuentes, Z. Marin, J. Tyson, D. Baddeley, J. Bewersdorf

The paper shows Rtn4 oligomers increase ER membrane curvature by localizing to elliptical tubules and enhancing local density.

bioRxiv · Jan 26, 2023 · PreprintCell Biology

Extracting nanoscale membrane morphology fromsingle-molecule localizations

Z. Marin, L. A. Fuentes, J. Bewersdorf, D. Baddeley

The paper introduces NanoWrap, a method for reconstructing subcellular membrane surfaces from single-molecule localization microscopy data, validated on simulated and experimental data.

bioRxiv · Jan 26, 2023Biophysics

An Integrated Platform for High-Throughput Nanoscopy

A. E. S. Barentine, Y. Lin, E. M. Courvan, P. Kidd, M. Liu, L. Balduf, T. Phan, F. Rivera-Molina, M. R. Grace, Z. Marin, M. Lessard, J. Rios-Chen, S. Wang, K. M. Neugebauer, J. Bewersdorf, D. Baddeley

This paper presents an integrated platform for high-throughput single-molecule localization microscopy (SMLM) that enables imaging of 10,000 cells per day.

bioRxiv · Apr 20, 2022Biophysics

PYMEVisualize: an open-source tool for exploring 3D super-resolution data

Z. Marin, M. Graff, A. E. S. Barentine, C. Soeller, K. K. H. Chung, L. A. Fuentes, D. Baddeley

PYMEVisualize is an open-source tool for interactive exploration and analysis of 3D, multicolor single-molecule localization data from super-resolution microscopy.

bioRxiv · Sep 29, 2020Biophysics