cell-cell communication

The paper examines oscillatory network directionality in the human medial temporal lobe during verbal working memory tasks, finding reversed directional patterns across encoding and retrieval phases.

This study introduces Perturb-Tags, a spatial multi-omic technique for CRISPR screening, revealing non-autonomous gene expression changes and spatial organization shifts in human embryoid bodies.

The paper introduces a zebrafish model and computational framework to systematically analyze cancer metastasis patterns across organs, revealing heterogeneity and spatial preferences in dissemination.

This paper introduces RIDGE, a deconvolution framework that generates spatially continuous cell-type maps of the human cortex, revealing both global organization and regional specialization.

The paper identifies a neural circuit in Drosophila that recognizes parasitoid wasps through visual features and drives defensive behaviors based on the wasp's position.

The paper develops a spatial proteomics workflow to study early astrocytic remodeling in an ALS mouse model, finding that motor neurons are surrounded by GFAP-high environments earlier than previously observed.

The paper uses single-cell transcriptomics to analyze brain cells in paper wasps, showing that Kenyon cells vary with social roles and respond to social interactions.

This paper introduces SLAP2, a high-speed microscope for measuring submicron synapses and dendritic voltage in behaving mice, revealing nonlinear input-output amplification in neurons.

The paper shows that mice retain spatial memory in the hippocampus after long absences, with neural patterns persisting despite changes in individual neuron activity.

This study introduces QUEST, a model that uses H&E histology to predict spatial protein expression, enabling virtual staining and analysis across biological scales.

The paper identifies how three transcriptomic cell types in the superior colliculus process visual motion with distinct feature selectivity, morphology, and connectivity.

The paper analyzes brain-wide neural activity in C. elegans during olfactory navigation and identifies functional circuits linking sensory input to motor behavior across different environments and behavioral states.

WhaleSonic provides a raw acoustic dataset of cetacean vocalizations in Northern Norway, supporting multichannel algorithms for source separation and communication analysis.

The paper introduces TSNR, a method for spatial protein prediction that uses protein-specific signals and broad molecular context, achieving high correlation on a benchmark.

This study shows that spatial prebiotic fermentation in a gut microbiota consortium is driven by metabolic cascades, revealing how spatial gradients influence microbial function and prebiotic efficacy.

This study identifies c-MYC as a non-canonical origin licensing accelerator, showing it increases licensing speed through TRRAP/GCN5 and histone H1 eviction, particularly in heterochromatin.

Kontext identifies spatial domains and cell-cell communication by integrating ligand-receptor interactions, outperforming existing methods in spatial transcriptomics.

The paper investigates immune infiltration and triad formation in early melanoma progression using spatial transcriptomics, finding increased immune engagement in Stage I lesions compared to Stage 0.

This study develops LiFEx to correlate live-cell imaging with expansion microscopy, revealing membrane changes linked to bacterial dissemination.

The paper shows that SST neurons become selectively coordinated with behaviorally relevant excitatory populations during motor skill learning.

This study examines early transcriptomic responses to Toxoplasma gondii infection in pregnant sheep, identifying tissue-specific immune and stress pathways linked to fetal loss.

The paper examines the localization of tRNA-splicing ligase complex proteins in SCA4 pontine neurons, finding their accumulation in neuronal intranuclear inclusions.

The paper shows that visual attention samples space in a hexagonal pattern guided by theta rhythms, similar to spatial navigation mechanisms.

This study identifies three splicing regulation patterns mediated by UAP56 and URH49 and their association with mRNA export pathways.

Spatialsnake provides a flexible workflow for spatial transcriptomics analysis across multiple platforms, enabling analysis of selected populations and tissue regions with adjustable parameters.

This study identifies metabolic and transcriptional changes in soybean during soybean cyst nematode infection, revealing immune system remodeling and co-option of symbiotic processes.

This study examines how marine prokaryotes respond transcriptionally to Fe-rich colloids from glacial and non-glacial sources, revealing contrasting growth and metabolic responses.

This study identifies stromal COL12A1 as a key component of the extracellular matrix niche that supports invasion in appendiceal mucinous neoplasms and pseudomyxoma peritonei.

This study shows that aging red blood cells rely on calcium for volume stability under shear stress, and impaired calcium regulation leads to flow and oxygen transport issues.