Topic · Molecular Biology · Biochemistry, Genetics and Molecular Biology
DNA Repair Mechanisms
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
1,000+ papers
- Cell BiologyNucleic Acids ResearchPeer-reviewed
Crossovers are regulated by a conserved and disordered synaptonemal complex domain
Ana Rita Rodrigues Neves, Ivana Čavka, Tobias Rausch, Simone Köhler
The paper identifies a conserved, disordered domain in SYP-4 that regulates crossover assurance and interference in meiosis by recruiting an E3 ligase.
10 citations - Cancer BiologyCancer ResearchPeer-reviewed
Replication poison treated BRCA1-deficient breast cancers are prone to MRE11 over-resection resulting in single strand DNA accumulation and mitotic catastrophe
Imène Tabet, Esin Orhan, Ermes Candiello…·Charles G. Theillet
This study shows BRCA1-deficient breast cancers are highly sensitive to gemcitabine, leading to ssDNA accumulation and mitotic catastrophe, which may enhance antitumor immune response.
3 citations - Cell BiologyMolecular & Cellular ProteomicsPeer-reviewed
Quantitative chromatin protein dynamics during replication origin firing in human cells
Sampath Amitash Gadi, Ivo Alexander Hendriks, Christian Friberg Nielsen…·Luis Ignacio Toledo
The paper uses proteomics to analyze protein dynamics during replication origin firing in human cells, identifying NCAPH2 as a novel factor required for efficient origin firing.
1 citation - Cell BiologyNature CommunicationsPeer-reviewed
PHOSPHORYLATION-DEPENDENT ASSOCIATION OF WRN WITH RPA IS REQUIRED FOR RECOVERY OF REPLICATION FORKS STALLED AT SECONDARY DNA STRUCTURES
Alessandro Noto, Pasquale Valenzisi, Flavia Di Feo…·Pietro Pichierri
This study shows that phosphorylation-dependent WRN-RPA interaction is essential for replication fork recovery after stalling at secondary DNA structures, preventing DNA damage and G4 accumulation.
19 citationstop 5% - Molecular BiologyEMBO ReportsPeer-reviewed
The BLM-TOP3A-RMI1-RMI2 proximity map reveals that RAD54L2 suppresses sister chromatid exchanges
Jung Jennifer Ho, Edith Cheng, Cassandra J. Wong…·Grant W. Brown
The paper identifies RAD54L2 as a regulator of recombination by showing its interaction with the BTRR complex and its role in suppressing sister chromatid exchanges.
3 citations - BiochemistryNucleic Acids ResearchPeer-reviewed
Local structural dynamics of Rad51 protomers revealed by cryo-electron microscopy of Rad51-ssDNA filaments
Jie Liu, Steven K Gore, Wolf‐Dietrich Heyer
This paper uses cryo-EM to determine the structure of Rad51-ssDNA filaments in budding yeast, revealing local structural dynamics and conformational changes in Rad51 protomers.
- BioinformaticsHALPeer-reviewed
Dual DNA Replication Modes: Varying Fork Speeds and Initiation Rates within the spatial replication program in Xenopus
Diletta Ciardo, Olivier Haccard, Francesco De Carli…·Kathrin Marheineke
The paper investigates DNA replication dynamics in Xenopus, identifying two replication modes with distinct fork speeds and origin firing rates, and shows Plk1's role in coordinating these processes.
DOI 10.1093/nar/gkaf007 - BiochemistrybioRxivPreprint
Distinct Mechanisms of Recognition of Phosphorylated RNAPII C-Terminal Domain by BRCT Repeats of the BRCA1-BARD1 Complex: Insights from Structural and Functional Analyses
Veronika Klapstova, Kateřina Šedová, Josef Houser, Marek Šebesta
This study investigates how the BRCA1-BARD1 complex interacts with phosphorylated RNAPII CTD through BRCT repeats, revealing its role in RNAPII condensation and transcription-DNA repair coordination.
DOI 10.1101/2025.01.22.634233 - Plant BiologybioRxivPreprint
Condensin II mediates efficient chromatid resolution and resistance to genotoxic stress in Arabidopsis
Jovanka Vladejić, Klára Procházková, Eva Dvořák Tomaštíková…·Aleš Pečinka
This study shows that Condensin II in Arabidopsis is essential for resisting genotoxic stress and proper chromatid resolution during mitosis.
DOI 10.1101/2025.01.21.634090 - Molecular BiologybioRxivPreprint
Local nucleolar surveillance mechanisms maintain rDNA stability
Ruofei Liu, Jiachen Xuan, Junqi Pan…·Elaine Sanij
This study identifies localized nucleolar surveillance mechanisms that respond to rDNA damage by activating the nucleolar DNA damage response (nDDR) through R-loop formation and RAD54L protection.
1 citation - Cancer BiologybioRxivPreprint
Carcinogen-induced DNA adducts amplify APOBEC mutagenesis through nucleotide excision repair
Cameron C. Durfee, Bojana Stefanovska, Rongjie Wu…·Reuben S. Harris
This study shows that carcinogen-induced DNA adducts enhance APOBEC3B-mediated mutagenesis, leading to increased mutation rates in cancer genomes.
- BiochemistrybioRxivPreprint
The mismatch repair factor Mlh1-Pms1 uses ATP to compact and remodel DNA
Bryce W. Collingwood, Amruta N. Bhalkar, Carol M. Manhart
This study shows that Mlh1-Pms1 uses ATP to compact and remodel DNA, which is important for mismatch repair and genome stability.
DOI 10.1101/2025.01.16.633381 - Molecular BiologyJournal of Biological ChemistryPeer-reviewed
Profiling Tel1 Signaling Reveals a Non-Canonical Motif Targeting DNA Repair and Telomere Control Machineries
William J. Comstock, Shrijan Bhattarai, Ethan James Sanford…·Marcus Bustamante Smolka
The paper identifies a novel phosphorylation motif in Tel1 signaling that expands the understanding of its role in DNA repair and telomere control.
2 citations - Molecular BiologybioRxivPreprint
Rad5 and Telomere Replication
This paper reviews the role of Rad5 in telomere replication and its connection to the DNA Damage Tolerance pathway in yeast.
DOI 10.1101/2025.01.16.633138 - Molecular BiologybioRxivPreprint
Quantitative analysis of the frequency of chromosome loss following DSB induction
Seiya Matsuno, Ryo Ishida, Ryotaro Kawasumi…·Takuya Abe
This study quantifies how DNA damage, specifically DSBs and nicks, leads to chromosome loss in minichromosomes, contributing to aneuploidy.
1 citation - Molecular BiologyInternational Journal of Molecular SciencesPeer-reviewed
In and out of replication stress: PCNA/RPA1-based dynamics of fork stalling and restart in the same cell
Teodora Dyankova-Danovska, Sonya Uzunova, Georgi Danovski…·Stoyno Stoynov
This study uses live-cell microscopy to analyze PCNA and RPA1 dynamics during replication fork stalling and restart in response to hydroxyurea, revealing distinct processes and the role of ATR in fork restart.
3 citations - GeneticsbioRxivPreprint
Yeast DNA Polymerase δ Proofreading Nuclease Suppresses Translesion Synthesis and Facilitates Recombination in DNA Lesion Bypass.
Jun Che, Quan Wang, Jia‐Peng He…·Sang Eun Lee
This study shows that DNA polymerase δ proofreading nuclease inhibits translesion synthesis and promotes recombination during DNA lesion bypass.
DOI 10.1101/2025.01.14.632785 - Cell BiologybioRxivPreprint
Identification of critical factors of the replication stress response in human cells
Louise M.E. Janssen, Empar Baltasar Pérez, Chantal Vaarting…·Jonne A. Raaijmakers
The paper identifies genes critical for the replication stress response in human cells, revealing both known and novel factors that protect against replication stress-induced toxicity.
- Cancer BiologyNucleic Acids ResearchPeer-reviewed
Single-nucleotide-resolution genomic maps of O6-methylguanine from the glioblastoma drug temozolomide
Jasmina Kubitschek, Vakil Takhaveev, Cécile Mingard…·Shana J. Sturla
This paper introduces O6-MeG-seq, a method to map O6-methylguanine at single-nucleotide resolution, and shows MGMT does not preferentially repair O6-MeG based on sequence context or chromatin state.
7 citations - Molecular BiologyScience AdvancesPeer-reviewed
Flap endonuclease 1 repairs DNA-protein crosslinks via ADP-ribosylation
Yilun Sun, Lisa M. Miller Jenkins, Lara H. El Touny…·Yves G. Pommier
This study identifies FA-induced DNA-protein crosslinks (DPCs) and discovers that FEN1 repairs them via PARylation, revealing a novel PARP1-FEN1 pathway for DPC repair.
14 citations - Cell BiologybioRxivPreprint
The PST repeat region of MDC1 is a tunable multivalent chromatin tethering domain
Joshua R. Heyza, Maria Mikhova, Gloria I. Perez…·Jens C. Schmidt
This study shows the PST repeat region of MDC1 is a multivalent chromatin tethering domain with tunable affinity that aids in DNA break tethering during HR and mitosis.
3 citations - GeneticsGeneticsPeer-reviewed
Msh2-Msh3 DNA-binding is not sufficient to promote trinucleotide repeat expansions in Saccharomyces cerevisiae
K. Casazza, Gregory M. Williams, Lauren Johengen…·Jennifer A. Surtees
The paper shows that DNA-binding activity alone of Msh2-Msh3 is insufficient to promote trinucleotide repeat expansions in yeast.
2 citations - GeneticsGeneticsPeer-reviewed
Functions of the Bloom Syndrome Helicase N-terminal Intrinsically Disordered Region
Colleen Bereda, Evan B. Dewey, Mohamed A Nasr…·Jeff J. Sekelsky
The paper investigates the functional roles of the N-terminal intrinsically disordered region of Bloom Syndrome helicase in Drosophila by deleting conserved regions and assessing their impact on DNA repair and meiotic processes.
4 citations - BiochemistryNature CommunicationsPeer-reviewed
Reconstitution of human DNA licensing and the structural and functional analysis of key intermediates
Jennifer N. Wells, Lucy V. Edwardes, Vera Leber…·Christian Speck
This study reconstitutes human DNA licensing, analyzes its intermediates, and identifies how cancer mutations disrupt helicase loading.
20 citationstop 5% - Molecular BiologyNucleic Acids ResearchPeer-reviewed
Transcription near arrested DNA replication forks triggers ribosomal DNA copy number changes
Mariko Sasaki, Takehiko Kobayashi
The paper shows that Sir2 suppresses transcription near arrested replication forks in yeast rDNA to prevent copy number changes by directing DSB repair away from HR.
8 citations - Molecular BiologybioRxivPreprint
Polymerase Eta Recruits FANCD2 to Common Fragile Sites to Maintain Genome Stability
Mrunmai Niljikar, Angelica Barreto-Galvez, Saloni Patel…·Advaitha Madireddy
This study shows that polymerase Eta's PIP and UBZ domains are critical for managing replication stress at common fragile sites by recruiting FANCD2 and preventing DNA damage.
DOI 10.1101/2025.01.06.631600 - GeneticsProceedings of the National Academy of SciencesPeer-reviewed
Distinct and interdependent functions of three RING proteins regulate recombination during mammalian meiosis
Masaru Ito, Yan Yun, Dhananjaya S. Kulkarni…·Neil Hunter
The paper investigates the distinct and interdependent roles of three RING proteins in regulating meiotic recombination in mice, revealing their unique spatiotemporal dynamics and functional relationships.
16 citationstop 4% - Cell BiologyNature Cell BiologyPeer-reviewed
Homologous recombination promotes mitotic death to suppress the innate immune response
Radosław Szmyd, Sienna Casolin, Lucy French…·Anthony J. Cesare
The paper shows that homologous recombination (HR) promotes mitotic death, which suppresses the innate immune response by preventing immunogenic cell death.
22 citationstop 3% - MicrobiologymicroLifePeer-reviewed
New components of the community based DNA-repair mechanism in Sulfolobales
Alejandra Recalde, Alexander Wagner, Shamphavi Sivabalasarma…·Marleen van Wolferen
The paper identifies two novel components, UpsC and CedD, involved in DNA repair mechanisms in Sulfolobus acidocaldarius through genetic analysis and functional assays.