Author

D. Agarwal

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 3 Animal Behavior & Cognition· 1 Cancer Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:cell type annotation· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2

Frequent Co-Authors

A. Al-Diwani· 1 shared A. C. Yopp· 1 shared A. G. Murchison· 1 shared A. Heslington· 1 shared A. K. Saxena· 1 shared A. Kotnis· 1 shared A. Larochelle· 1 shared A. Rathipriya· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 7 mutual co-author links

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1 shared paperImmunology

A. Al-Diwani

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Author profile →

6 papers

Recent·Most cited

Fine needle aspiration of human lymph nodes reveals cell populations and soluble interactors pivotal to immunological priming

N. M. Provine, A. Al-Diwani, D. Agarwal, K. Dooley, A. Heslington, A. G. Murchison, L. Garner, F. Sheerin, P. Klenerman, S. R. Irani

This study uses LN FNA combined with single-cell RNA-sequencing and proteomics to characterize immune cell populations and soluble interactors in human lymph nodes.

bioRxiv · Oct 18, 2023Immunology

Gene Expression Profiling and Physiological Adaptations of Pearl Spot (Etroplus suratensis) under Varying Salinity Conditions

P. P. Marbade, S. A. Shanmugam, E. Suresh, A. Rathipriya, D. Agarwal

This study examines the physiological and gene expression responses of Pearl spot fish to varying salinity levels, finding optimal performance at 15ppt with significant mortality at higher salinities.

bioRxiv · May 24, 2023Animal Behavior & Cognition

Systematic Single Cell Pathway Analysis (SCPA) reveals novel pathways engaged during early T cell activation

J. A. Bibby, D. Agarwal, T. Freiwald, N. Kunz, N. S. Merle, E. E. West, A. Larochelle, F. Chinian, S. Mukherjee, B. Afzali, C. Kemper, N. R. Zhang

SCPA identifies novel pathways in early T cell activation using scRNA-seq data, revealing unexpected regulatory mechanisms like type I interferon and arachidonic acid metabolism.

bioRxiv · Feb 7, 2022Immunology

Computationally validated SARS-CoV-2 CTL and HTL Multi-Patch Vaccines designed by reverse epitomics approach, shows potential to cover large ethnically distributed human population worldwide

S. Srivastava, S. Verma, M. Kamthania, D. Agarwal, A. K. Saxena, M. Kolbe, S. Singh, A. Kotnis, B. Rathi, S. A. Nayar, H.-J. Shin, K. Vashisht, K. C. Pandey

This paper designs and validates Multi-Patch Vaccines against SARS-CoV-2 using a reverse epitomics approach, showing potential to cover a large ethnically diverse human population.

bioRxiv · Sep 6, 2020Immunology

Hispanic/Latino gastric adenocarcinoma patients have distinct molecular profiles including a high rate of germline CDH1 mutations

S. C. Wang, Y. Yeu, S. T. Hammer, S. Xiao, M. Zhu, C. Hong, L. Y. Yoon, I. Nassour, J. Shen, D. Agarwal, S. I. Reznik, J. C. Mansour, A. C. Yopp, H. Zhu, T. H. Hwang, M. R. Porembka

This study identifies distinct molecular profiles in Hispanic/Latino gastric cancer patients, including a high rate of CDH1 germline mutations linked to aggressive clinical outcomes.

bioRxiv · Sep 11, 2019Cancer Biology

A specific sequence in the genome of respiratory syncytial virus regulates the generation of copy-back defective viral genomes

Y. Sun, E. Kim, S. A. Felt, L. Taylor, D. Agarwal, G. Grant, C. Lopez

This study identifies a specific RSV genomic sequence that regulates the generation of copy-back defective viral genomes, showing that cbDVG formation is not random and can be manipulated.

bioRxiv · Feb 15, 2019Microbiology