Author

J. Ray

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Ecology· 1 Pathology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:bacteria (other)· 3 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Research Focus:cell signaling & trafficking· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. M. Deutschbauer· 2 shared A. P. Arkin· 2 shared H. K. Carlson· 2 shared M. N. Price· 2 shared A. Boulanger· 1 shared A. Deak· 1 shared A. DeGemmis· 1 shared A. Deutschbauer· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersMicrobiology

A. M. Deutschbauer

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

FUSION: A web-based application for in-depth exploration of multi-omics data with brightfield histology

S. Border, R. Melo Ferreira, N. Lucarelli, D. Manthey, S. Kumar, A. Paul, S. Mimar, A. Naglah, Y.-H. Cheng, L. Barisoni, J. Ray, Y. Strekalova, A. Z. Rosenberg, J. E. Tomaszewski, J. B. Hodgin, , P. Sarder

FUSION is a web-based tool that integrates spatial -omics data with histology to analyze tissue states and identify spatial linkages between molecular and histopathologic features.

bioRxiv · Jul 9, 2024 · PreprintPathology

Sex-Specific Cardiovascular Adaptations to Simulated Microgravity in Sprague-Dawley Rats

E. Elsangeedy, D. N. Yamaleyeva, N. P. Edenhoffer, A. Deak, A. Soloshenko, J. Ray, X. Sun, O. H. Shaltout, N. Cruz Diaz, B. Westwood, D. Kim-Shapiro, D. I. Diz, S. Soker, V. M. Pulgar, A. Ronca, , L. M. Yamaleyeva

This study examines sex-specific cardiovascular adaptations to simulated microgravity in rats, finding increased arterial stiffness in females but not males.

bioRxiv · Mar 29, 2024 · PreprintPhysiology

Genome-wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection

J. S. Luneau, M. Baudin, T. Quiroz-Monnens, S. Carrere, O. Bouchez, M.-F. Jardinaud, C. Gris, J. Francois, J. Ray, B. Torralba, M. Arlat, J. D. Lewis, A. M. Deutschbauer, E. Lauber, L. D. Noël, A. Boulanger

This study identifies key fitness determinants of Xanthomonas campestris during early plant infection using RB-TnSeq, revealing novel genes involved in adaptation and virulence.

bioRxiv · Feb 7, 2022Microbiology

Modification of forests by people means only 40% of remaining forests have high ecosystem integrity

H. S. Grantham, A. Duncan, T. D. Evans, K. R. Jones, H. Beyer, R. Schuster, J. Walston, J. Ray, J. Robinson, M. Callow, T. Clements, H. Costa, A. DeGemmis, P. R. Elsen, J. Ervin, , S. Wang

The paper quantifies global forest modification, finding 40.5% of remaining forests have high ecosystem integrity, mostly in specific regions, and highlights the need for policies to protect these areas.

bioRxiv · Mar 5, 2020 · PreprintEcology

Large-scale chemical-genetics of the human gut bacterium Bacteroides thetaiotaomicron

H. Liu, M. N. Price, H. K. Carlson, Y. Chen, J. Ray, A. L. Shiver, C. J. Petzold, K. C. Huang, A. P. Arkin, A. Deutschbauer

This study systematically measures mutant phenotypes for genes in Bacteroides thetaiotaomicron to uncover gene functions and improve understanding of gut microbiota physiology.

bioRxiv · Mar 9, 2019Microbiology

Oxidative pathways of deoxyribose and deoxyribonate catabolism

M. N. Price, J. Ray, A. T. Iavarone, H. K. Carlson, E. M. Ryan, R. R. Malmstrom, A. P. Arkin, A. M. Deutschbauer

The paper identifies novel oxidative pathways for deoxyribose and deoxyribonate catabolism in bacteria using genome-wide mutant fitness assays and genetic evidence.

bioRxiv · Nov 12, 2018Microbiology