Author

N. Fernandez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Cell Biology· 2 Ecology· 2 Immunology· 2 Biochemistry· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 7 Research Focus:cell type annotation· 5 Organism:human· 4 Research Focus:differential expression· 3 Assay:bulk RNA-seq· 2 Research Focus:cell-cell communication· 2 Research Focus:ecology & biodiversity· 2 Research Focus:gene regulatory network inference· 2

Frequent Co-Authors

C. Capinha· 2 shared H. M. Pereira· 2 shared I. McCallum· 2 shared S. Gnjatic· 2 shared S. Kim-Schulze· 2 shared A. Bonn· 1 shared A. Ceia-Hasse· 1 shared A. Chudnovskiy· 1 shared

Activity by Year

2017-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersEcology

C. Capinha

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

Biodiversity monitoring in Europe: user and policy needs

H. Moersberger, J. W. Valdez, J. G. C. Martin, J. Junker, I. Georgieva, S. Bauer, P. Beja, T. D. Breeze, M. Fernandez, N. Fernandez, L. Brotons, U. Jandt, H. Bruelheide, D. W. Kissling, C. Langer, , A. Bonn

The paper identifies gaps in biodiversity monitoring in Europe and recommends establishing a coordinated network to improve data harmonization and policy response to biodiversity loss.

bioRxiv · Jul 12, 2023Ecology

Predicting the timing of ecological phenomena across regions using citizen science data

C. Capinha, A. Ceia-Hasse, S. de-Miguel, C. Vila-Vicosa, M. Porto, I. Jaric, P. Tiago, N. Fernandez, J. Valdez, I. McCallum, H. M. Pereira

This paper introduces a framework to predict ecological event timing using citizen science data, showing accurate predictions for Japanese beetles and winter chanterelles across regions.

bioRxiv · May 5, 2023 · PreprintEcology

RevGel-seq: instrument-free single-cell RNA sequencing using a reversible hydrogel for cell-specific barcoding

J. Komatsu, A. Cico, R. Poncin, M. LeBohec, J. Morf, S. Lipin, A. Grandorge, H. Eckert, A. Saffarian, L. Cathaly, F. Guerin, S. Majello, D. Ulveling, A. Vayaboury, N. Fernandez, , S. J. Edelstein

RevGel-seq provides an instrument-free single-cell RNA sequencing method using reversible hydrogels, achieving results comparable to microfluidic technologies and applicable to various cell types.

bioRxiv · Jul 1, 2022 · PreprintCell Biology

Intratumoral mregDC and CXCL13 T helper niches enable local differentiation of CD8 T cells following PD-1 blockade

A. Magen, P. Hamon, N. Fiaschi, L. Troncoso, E. Humblin, D. D'souza, T. Dawson, M. D. Park, J. Kim, S. Hamel, M. Buckup, C. Chang, A. Tabachnikova, H. Schwartz, N. Malissen, , Merad

The paper identifies intratumoral niches involving mregDC and CXCL13+ Th cells that support CD8 T cell differentiation following PD-1 blockade in HCC patients.

bioRxiv · Jun 22, 2022 · PreprintImmunology

Inhibition of Tgfβ signaling enables durable ventricular pacing by TBX18 gene transfer

J. Fan, N. K. Kim, N. Fernandez, T. Y. Kim, J. Li, D. Wolfson, H. C. Cho

This study shows that combining TBX18 gene transfer with Tgfβ inhibition sustains biological cardiac pacing in rats beyond four weeks.

bioRxiv · Jun 2, 2022 · PreprintCell Biology

Immune Profiling of Atherosclerotic Plaques Identifies Innate and Adaptive Dysregulations Associated with Ischemic Cerebrovascular Events

D. M. Fernandez, A. H. Rahman, N. Fernandez, A. Chudnovskiy, E.-a. D. Amir, L. Amadori, N. S. Khan, C. K. Wong, R. Shamailova, C. Hill, Z. Wang, R. Remark, J. R. Li, C. Pina, C. Faries, , C. Giannarelli

The paper identifies immune dysregulations in atherosclerotic plaques linked to ischemic cerebrovascular events using single-cell analyses of T cells and macrophages.

bioRxiv · Aug 2, 2019 · PreprintImmunology

Cyclic di-GMP Increases Catalase Production and Hydrogen Peroxide Tolerance in Vibrio cholerae

N. Fernandez, C. M. Waters

This study shows that c-di-GMP in V. cholerae increases catalase production and H2O2 tolerance via regulation of katB and requires VpsT and VpsR transcription factors.

bioRxiv · May 8, 2019Microbiology

Genetic variation and RNA structure regulate microRNA biogenesis

N. Fernandez, R. A. Cordiner, R. S. Young, N. Hug, S. Macias, J. F. Caceres

The paper shows a genetic variant in pri-mir-30c-1 alters RNA structure, enhancing SRSF3 binding and increasing miR-30c levels in vitro and in cells.

Nature Communications · May 3, 2017Peer-reviewedBiochemistry