Author
R. C. Wade
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2018-2023 · peak 4/yrCo-Author Collaboration Network
10 top collaborators · 5 mutual co-author links13 papers
Recent·Most cited
- Pharmacology & ToxicologybioRxiv
S100A1ct: a synthetic peptide derived from human S100A1 protein improves cardiac contractile performance and survival in pre-clinical heart failure models
D. Kehr, J. Ritterhoff, M. Glaser…·P. Most
This paper develops a synthetic peptide S100A1ct that improves cardiac function and survival in heart failure models by enhancing Ca2+ cycling and targeting SERCA2a and RyR2.
DOI 10.1161/circulationaha.123.066961 - BiochemistrybioRxivPreprint
SUMO interacting motif (SIM) of S100A1 is critical for S100A1 post-translational protein stability
Z. H. Jebessa, M. Glaser, J. Zhao…·P. Most
This study identifies a SUMO interacting motif in S100A1 that regulates its post-translational stability through SUMO-mediated interactions.
DOI 10.1101/2023.01.18.524665 - BiophysicsbioRxiv
Scaling protein-water interactions in the Martini 3 coarse-grained force field to simulate transmembrane helix dimers in different lipid environments
A. Claveras Cabezudo, C. Athanasiou, A. Tsengenes, R. C. Wade
The paper introduces parameters for simulating dodecylphosphocholine in Martini 3 to enable protein insertion into micelles and bilayers by adjusting protein-water interactions.
DOI 10.1021/acs.jctc.2c00950 - Pharmacology & ToxicologybioRxiv
Comparative analysis of drug-salt-polymer interactions by experiment and molecular simulation improves biopharmaceutical performance
S. Mukesh, G. Mukherjee, R. Singh…·R. C. Wade
The paper combines experiments and molecular simulations to identify optimal drug-salt-polymer combinations for improving biopharmaceutical performance of poorly water-soluble drugs.
DOI 10.1038/s42004-023-01006-0 - BiochemistrybioRxiv
Diffusion of small molecule drugs is affected by surface interactions and crowder proteins
D. Dey, A. Nunes-Alves, R. C. Wade, G. Schreiber
This study examines how protein crowders affect the diffusion of small molecules, finding varied impacts based on molecular interactions and self-aggregation.
DOI 10.1016/j.isci.2022.105088 - BiophysicsbioRxivPreprint
Robustness of trinucleosome compaction to A-tract mediated linker histone orientation
M. De, M. Wuertz, G. Mueller…·R. C. Wade
This study investigates whether A-tract mediated linker histone orientation affects trinucleosome compaction and stability, finding no significant differences in compaction or stability between DNA sequences with different A-tract positions.
DOI 10.1101/2021.08.13.456082 - BiophysicsbioRxiv
A multiscale approach for computing gated ligand binding from molecular dynamics and Brownian dynamics simulations
S. K. Sadiq, A. Muniz Chicharro, P. Friedrich, R. C. Wade
The paper develops a multiscale method to compute gated ligand binding using molecular dynamics and Brownian dynamics simulations, applied to HIV-1 protease to quantify conformational gating effects on drug binding kinetics.
DOI 10.1021/acs.jctc.1c00673 - BiophysicsbioRxiv
G Protein-Coupled Receptor-Ligand Dissociation Rates and Mechanisms from {tau}RAMD Simulations
This paper uses {tau}RAMD simulations to study GPCR ligand dissociation rates and mechanisms, showing agreement with conventional MD simulations and revealing effects of allosteric modulation.
DOI 10.1021/acs.jctc.1c00641 - BiophysicsbioRxiv
A blueprint for high affinity SARS-CoV-2 Mpro inhibitors from activity-based compound library screening guided by analysis of protein dynamics
J. Gossen, S. Albani, A. Hanke…·G. Rossetti
The paper identifies a blueprint for high affinity SARS-CoV-2 Mpro inhibitors by analyzing protein dynamics and redefining druggability through virtual screening and pharmacophore modeling.
DOI 10.1021/acsptsci.0c00215 - BiophysicsbioRxiv
DNA-sequence dependent positioning of the linker histone in a nucleosome: a single-pair FRET study
M. De, M. A. Oeztuerk, S. Isbaner…·R. C. Wade
This paper uses single-pair FRET to show that the linker histone H1.0b binds on-dyad to A-tract DNA via minor groove recognition, revealing a new mechanism for AT-rich DNA binding.
DOI 10.1016/j.bpj.2021.07.012 - BiochemistrybioRxiv
An electron transfer competent structural ensemble of membrane-bound cytochrome P450 1A1 and cytochrome P450 oxidoreductase
G. Mukherjee, P. P. Nandekar, R. C. Wade
This study investigates the structural and functional interactions between membrane-bound CYP 1A1 and CPR, identifying ET-compatible arrangements and explaining lower ET rates compared to bacterial CYPs.
DOI 10.1038/s42003-020-01568-y - BiophysicsbioRxiv
Halogen-aromatic π-interactions modulate inhibitor residence time
C. Heroven, V. Georgi, G. K. Ganotra…·S. Knapp
The paper shows that halogen-aromatic π-interactions increase inhibitor residence time in kinase-inhibitor complexes, providing a strategy to improve drug efficacy and selectivity.
DOI 10.1002/anie.201801666