Author

D. Clark

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 2 Plant Biology· 2 Biophysics· 1 Cell Biology· 1 Ecology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 5 Research Focus:differential expression· 4 Approach:experimental assay· 4 Organism:mouse· 3 Research Focus:cell-cell communication· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Assay:imaging· 2

Frequent Co-Authors

A. Anandkumar· 1 shared A. Bogetti· 1 shared A. Brace· 1 shared A. Christiansen· 1 shared A. Clyde· 1 shared A. Diacou· 1 shared A. Dommer· 1 shared A. Feke· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperBiophysics

A. Anandkumar

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Author profile →

7 papers

Recent·Most cited

Variability and correlations among vital rates and their influence on population growth in mule and black-tailed deer

J. S. Ruprecht, T. Forrester, D. Clark, M. Wisdom, J. Smith, T. Levi

This study identifies adult female survival as the key factor influencing population growth in mule and black-tailed deer, showing it explains 62% of variation in lambda, with populations declining when survival drops below 70%.

bioRxiv · Mar 15, 2024Ecology

Single-cell Transcriptional Analysis of the Cellular Immune Response in the Oral Mucosa of Mice

P. Cantalupo, A. Diacou, S. Park, V. Soman, J. Chen, D. Glenn, U. Chandran, D. Clark

This study uses scRNA-seq to analyze immune cell changes in mouse oral mucosa across periodontal health, disease, and resolution conditions, identifying distinct macrophage subpopulations and markers associated with resolution.

bioRxiv · Oct 18, 2023 · PreprintImmunology

Streamlined, cell-specific single-molecule RNA-FISH of core clock mRNAs in clock neurons in whole mount Drosophila brains

Y. Yuan, M. A. Padilla, D. Clark, S. Yadlapalli

The paper introduces a streamlined smFISH protocol and machine learning analysis to quantify Clock mRNA levels and localization in Drosophila clock neurons, showing cyclic mRNA counts in lLNvs.

bioRxiv · Sep 5, 2022Cell Biology

#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol

A. Dommer, L. Casalino, F. Kearns, M. Rosenfeld, N. Wauer, S.-H. Ahn, J. Russo, S. Oliveira, C. Morris, A. Bogetti, A. Trifan, A. Brace, T. Sztain, A. Clyde, H. Ma, , Muholland

This paper uses AI-enabled multiscale computational microscopy to study SARS-CoV-2 Delta variant in respiratory aerosols, revealing atomic-level insights into airborne transmission.

bioRxiv · Nov 12, 2021Biophysics

Quantitative dissection of color patterning in the foliar ornamental Coleus reveals underlying features driving aesthetic value

M. Li, V. Coneva, D. Clark, D. H. Chitwood, M. Frank

This study uses a new phenotyping approach to analyze color patterns in coleus plants and identifies features driving breeder and consumer preferences.

bioRxiv · Jan 11, 2021 · PreprintPlant Biology

A metabolic coincidence mechanism controls winter photoperiodism in plants

W. Liu, A. Feke, C. C. Leung, D. Tarte, W. Yuan, M. Vanderwall, G. C. Sager, X. Wu, A. Schear, D. Clark, B. C. Thines, J. Gendron

The paper identifies a metabolic coincidence mechanism in Arabidopsis that controls winter photoperiodism, independent of the canonical CO/FT pathway.

bioRxiv · Nov 13, 2020 · PreprintPlant Biology

Age-related changes to macrophages are detrimental to fracture healing

D. Clark, S. Brazina, F. Yang, D. Hu, E. Niemi, T. Miclau, M. Nakamura, R. Marcucio

This study shows that age-related changes in macrophages impair fracture healing in old mice, and depleting these macrophages improves healing outcomes.

bioRxiv · Jul 31, 2019 · PreprintImmunology