Author

D. Dodd

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 5

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Organism:mouse· 4 Research Focus:host-pathogen & immune response· 3 Assay:metabolomics· 3 Research Focus:cell type annotation· 2 Assay:metagenomics· 2 Organism:C. elegans· 1 Approach:deep learning· 1

Frequent Co-Authors

W. Van Treuren· 3 shared Y. Liu· 3 shared B.-H. Hou· 2 shared H. Chen· 2 shared J. L. Sonnenburg· 2 shared S. K. Higginbottom· 2 shared A. C. Pao· 1 shared A. Heinken· 1 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

W. Van Treuren

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Systems biology illuminates alternative metabolic niches in the human gut microbiome

C. Noecker, J. Sanchez, J. E. Bisanz, V. Escalante, M. Alexander, K. Trepka, A. Heinken, Y. Liu, D. Dodd, I. Thiele, B. DeFelice, P. J. Turnbaugh

This study identifies the metabolic niche of Eggerthella lenta in the human gut by combining experimental and computational approaches, revealing its use of acetate and arginine catabolism.

bioRxiv · Sep 19, 2022 · PreprintMicrobiology

A widely distributed gene cluster compensates for uricase loss in hominids

Y. Liu, J. B. Jarman, Y. S. Low, S. Huang, H. Chen, M. E. Defeo, K. Sekiba, B.-H. Hou, C. Ganesan, A. C. Pao, S. Gombar, D. Dodd

The paper identifies a bacterial gene cluster that compensates for human uricase loss by degrading uric acid in the gut, linking gut microbiota to hyperuricemia and gout risk.

bioRxiv · Jul 24, 2022Microbiology

A metabolomics pipeline enables mechanistic interrogation of the gut microbiome

S. Han, W. Van Treuren, C. R. Fischer, B. D. Merrill, B. C. DeFelice, J. M. Sanchez, S. K. Higginbottom, L. Guthrie, L. A. Fall, D. Dodd, M. A. Fischbach, J. L. Sonnenburg

The paper develops a metabolomics pipeline to identify microbiota-dependent metabolites and explores their links to host phenotypes using machine learning and comparative genomics.

bioRxiv · May 25, 2021Microbiology

Electron transfer proteins in gut bacteria yield metabolites that circulate in the host

Y. Liu, H. Chen, W. Van Treuren, B.-H. Hou, S. K. Higginbottom, J. L. Sonnenburg, D. Dodd

The paper shows that gut bacteria use reductive amino acid metabolism to produce metabolites that circulate in the host, linked to energy capture via the Rnf complex.

bioRxiv · Dec 11, 2019 · PreprintMicrobiology

Depletion of microbiome-derived molecules in the host using Clostridium genetics

C.-J. Guo, B. Allen, K. Hiam, D. Dodd, W. van Treuren, S. Higginbottom, C. Fischer, J. Sonnenburg, M. Spitzer, M. Fischbach

This study develops a genetic method to disable Clostridium species and investigates the impact of microbiome-derived molecules on host IgA modulation.

bioRxiv · Aug 27, 2018Microbiology