E. Reed

Paired metagenomic and chemical evaluation of an aflatoxin contaminated dog kibble

The paper evaluates aflatoxin-contaminated dog kibble using paired metagenomic and chemical data to correlate fungal DNA abundance with toxin levels.

Fecal microbiomes of laboratory beagles receiving antiparasitic formulations in an experimental setting

The paper describes the fecal microbiome of laboratory beagles before and after antiparasitic drug administration to assess in vivo versus in vitro bioequivalence.

Metagenomic survey of antimicrobial resistance (AMR) in Maryland surface waters differentiated by high and low human impact

The paper surveys antimicrobial resistance in Maryland surface waters, finding higher prevalence of beta-lactamase genes in high human impact areas.

Plasma Proteome Perturbation for CMV DNAemia in Kidney Transplantation

The paper identifies plasma proteomic changes associated with CMV DNAemia in kidney transplant recipients, revealing biomarkers for disease prediction and immune pathway insights.

Multi-modal profiling of peripheral blood cells across the human lifespan reveals distinct immune cell signatures of aging and longevity

The paper analyzes immune cell changes in centenarians and younger individuals to identify aging and longevity signatures in peripheral blood cells.

Advancing antimicrobial resistance monitoring in surface waters with metagenomic and quasimetagenomic methods

This study compares metagenomic and quasimetagenomic methods to detect antimicrobial resistance genes in surface waters, showing quasimetagenomic data identifies significantly more resistance determinants.

A Data-Driven Transcriptional Taxonomy of Adipogenic Chemicals to Identify White and Brite Adipogens

The paper develops a classification system to identify PPARγ ligands and categorize chemicals as white or brite adipogens using RNA-Seq and lipid accumulation data.

Genomic Evidence of Environmental and Resident Salmonella Senftenberg and Montevideo Contamination in the Pistachio Supply-chain

This study analyzes Salmonella contamination in pistachios using genomic data to identify persistent strains and their adaptation mechanisms.