Author

J. Braun

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Biophysics· 1 Ecology· 1 Evolutionary Biology· 1 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1

Frequent Co-Authors

R. Arnaout· 2 shared A. A. Schellenberger· 1 shared A. Cheng· 1 shared A. Harger· 1 shared A. Kirmaier· 1 shared A. Morgan· 1 shared A. Pashkova· 1 shared A. V. Taubenberger· 1 shared

Activity by Year

2020-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersImmunology

R. Arnaout

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Paradigm shift in biomarker translation: a pipeline to generate clinical grade biomarker candidates from DIA-MS discovery

Q. Fu, M. Vegesna, N. Sundararaman, E. Damoc, T. N. Arrey, A. Pashkova, E. Mengesha, P. Debbas, S. Joung, D. Li, S. Cheng, J. Braun, D. P. B. McGovern, C. Murray, Y. Xuan, J. E. Van Eyk

This paper introduces TEAQ, a software tool that selects clinical-grade biomarker candidates from DIA-MS data by evaluating protein quantification metrics in a discovery cohort.

bioRxiv · Mar 20, 2024 · PreprintBiochemistry

Contrasting Effects of SARS-CoV-2 Vaccination vs. Infection on Antibody and TCR Repertoires

J. Braun, E. D. Hill, E. Contreras, M. Yasuda, A. Morgan, S. Ditelberg, E. Winter, C. Callahan, G. Mazzoni, A. Kirmaier, H. Mirebrahim, H. Asgharian, D. Telman, A.-R. Y. Collier, D. H. Barouch, , R. Arnaout

This study compares antibody and TCR repertoires in SARS-CoV-2 infectees, vaccinees, and controls to predict neutralizing antibody titers and identifies subtle differences in adaptive immune responses.

bioRxiv · Sep 8, 2023 · PreprintImmunology

ct2vl: Converting Ct Values to Viral Loads for SARS-CoV-2 RT-qPCR Test Results

E. Hill, F. Yilmaz, C. J. Callahan, A. Cheng, J. Braun, R. Arnaout

The paper introduces ct2vl, a Python package that converts RT-qPCR Ct values to viral loads for SARS-CoV-2 tests, enabling quantitative analysis of test results.

bioRxiv · Jun 20, 2022 · PreprintMicrobiology

Comparative genomics reveals insight into the evolutionary origin of massively scrambled genomes.

Y. Feng, R. Neme, L. Y. Beh, X. Chen, J. Braun, M. W. Lu, L. F. Landweber

This study compares genome rearrangement features across ciliates to understand the evolutionary origin of massively scrambled genomes.

bioRxiv · May 9, 2022Evolutionary Biology

Adipose cells and tissues soften with lipid accumulation while in diabetes adipose tissue stiffens

S. Abuhattum, P. Kotzbeck, R. Schluessler, A. Harger, A. A. Schellenberger, K. Kim, J.-C. Escolano, T. Mueller, J. Braun, M. Wabitsch, M. Tschoep, I. Sack, M. Brankatschk, J. Guck, K. Stemmer, A. V. Taubenberger

This study investigates how adipocyte shape, size, and lipid accumulation affect mechanical properties of adipose tissue in health, obesity, and diabetes.

bioRxiv · Feb 9, 2022Biophysics

The shrub Ephedra californica facilitates arthropod communities along a regional desert climatic gradient.

J. Braun, M. Westphal, C. J. Lortie

This study examines how the shrub Ephedra californica affects arthropod communities across a desert aridity gradient, finding that canopy cover supports higher arthropod abundance and richness compared to soil surface vegetation.

bioRxiv · Aug 25, 2020Ecology