Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure
A. R. Shim, J. Frederick, E. M. Pujadas, T. Kuo, I. C. Ye, J. A. Pritchard, C. L. Dunton, P. Carrillo Gonzalez, N. Acosta, S. Jain, N. M. Anthony, L. M. Almassalha, I. Szleifer, V. Backman
This study shows that formamide in 3D FISH distorts nanoscale chromatin structure, while alternative methods like RASER-FISH and CRISPR-Sirius have minimal impact.
bioRxiv · Mar 1, 2024Biophysics