Author

J.-K. Yu

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4

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Research Focus:chromatin & epigenetic regulation· 4 Approach:comparative / phylogenetic analysis· 4 Research Focus:development & morphogenesis· 3 Assay:whole-genome sequencing· 3 Organism:non-human primate· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Y.-H. Su· 3 shared A. Perez-Posada· 2 shared C.-Y. Lin· 2 shared J. J. Tena· 2 shared T.-P. Fan· 2 shared Y.-C. Chen· 2 shared C. Bi· 1 shared C. Cai· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersEvolutionary Biology

Y.-H. Su

Mutual co-authors in cluster

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4 papers

Recent·Most cited

Chromosome-level genome assemblies of two hemichordates provide new insights into deuterostome origin and chromosome evolution

C.-Y. Lin, F. Marletaz, A. Perez-Posada, P. M. Martinez Garcia, S. Schloissnig, P. Peluso, G. T. Conception, P. Bump, Y.-C. Chen, C. Chou, C.-Y. Lin, T.-P. Fan, C.-T. Tsai, J. L. Gomez Skarmeta, J. J. Tena, , Y.-H. Su

This study presents chromosome-level genome assemblies of two hemichordates to infer deuterostome ancestral chromosomal architecture and lineage-specific modifications.

bioRxiv · Nov 1, 2023Evolutionary Biology

Insights into deuterostome evolution from the biphasic transcriptional programmes of hemichordates

A. Perez-Posada, C.-Y. Lin, T.-P. Fan, C.-Y. Lin, Y.-C. Chen, J. L. Gomez-Skarmeta, J.-K. Yu, Y.-H. Su, J. J. Tena

This study identifies a biphasic developmental program in hemichordates, revealing conserved gene regulatory networks and cis-regulatory elements across deuterostomes.

bioRxiv · Jun 10, 2022 · PreprintEvolutionary Biology

Three amphioxus reference genomes reveal gene and chromosome evolution of chordates

H. Zhen, L. Xu, C. Cai, Y. Zhou, J. Liu, Z. Zhu, W. Kang, D. Chen, S. Pei, T. Xue, W. Cen, C. Shi, X. Wu, Y. Huang, C. Xu, , Q. Zhou

This study presents three amphioxus reference genomes, revealing insights into chordate gene and chromosome evolution, including WGDs, chromatin architecture, and sex chromosome dynamics.

bioRxiv · Jan 4, 2022Evolutionary Biology

On the origin and evolution of RNA editing in metazoans

Q. Li, P. Zhang, J. Li, H. Yu, X. Zhan, Y. Zhu, Q. Guo, H. Tan, N. Lundholm, L. Garcia, M. D. Martin, M. A. Subirats, Y.-H. Su, I. Ruiz-Trillo, M. Q. Martindale, , G. Zhang

The paper investigates the origin and evolution of A-to-I RNA editing in metazoans, finding it emerged in the common ancestor and is nonadaptive in most regions except for specific taxa.

bioRxiv · Jan 19, 2020Evolutionary Biology