Author

E. Flynn

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Immunology· 3 Ecology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 4 Research Focus:cell type annotation· 3 Research Focus:differential expression· 3 Organism:human· 3 Assay:scRNA-seq· 3 Approach:deep learning· 2 Assay:proteomics· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

C. J. Ye· 2 shared C. Wibrand· 2 shared G. K. Fragiadakis· 2 shared M. Sirota· 2 shared Y. Sun· 2 shared A. Carvidi· 1 shared A. Combes· 1 shared A. De Palma· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersImmunology

C. J. Ye

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Coordinated immune dysregulation in Juvenile Dermatomyositis revealed by single-cell genomics

G. Rabadam, C. Wibrand, E. Flynn, G. C. Hartoularos, Y. Sun, C. J. Ye, S. Kim, Z. J. Gartner, M. Sirota, J. Neely

This study uses single-cell transcriptomics to identify immune dysregulation in JDM, revealing coordinated type I interferon activity and B cell abnormalities.

bioRxiv · Nov 7, 2023Immunology

Deciphering Cell-types and Gene Signatures Associated with Disease Activity in Rheumatoid Arthritis using Single Cell RNA-sequencing

M. Binvignat, B. Miao, C. Wibrand, M. Yang, D. Rychkov, E. Flynn, J. Nititham, W. Tamaki, U. Khan, A. Carvidi, M. Krueger, E. Niemi, Y. Sun, G. K. Fragiadakis, J. Sellam, , M. Sirota

This study uses single-cell RNA sequencing of PBMCs from RA patients and controls to identify disease-associated cell subsets and gene signatures linked to RA disease activity.

bioRxiv · Oct 5, 2023 · PreprintImmunology

Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis

E. Mennillo, Y. J. Kim, G. Lee, I. Rusu, R. Patel, L. C. Dorman, E. Flynn, S. Li, J. L. Bain, C. Andersen, A. Rao, S. Tamaki, J. Tsui, A. Shen, M. L. Lotstein, , M. G. Kattah

This study uses single-cell and spatial multi-omics to show VDZ affects mononuclear phagocyte subsets and highlights gene expression patterns in UC.

bioRxiv · Jan 21, 2023Immunology

Risks to pollinators from different land-use transitions: bee species’ responses to agricultural expansion show strong phylogenetic signal

A. De Palma, M. Kuhlmann, W. D. Pearse, E. Flynn, S. P. M. Roberts, S. G. Potts, A. Purvis

The paper assesses bee species' responses to agricultural expansion, intensification, and urbanization, finding strong phylogenetic signal in sensitivity to expansion but not intensification or urbanization.

bioRxiv · Jan 18, 2019 · PreprintEcology