J. Scaria

Caenorhabditis elegans model for in vivo screening of human gut microbiota mediated colonization and colonization resistance against Clostridioides difficile

This study uses C. elegans to screen human gut microbiota for colonization and resistance against C. difficile, finding 46% colonization success and 50% in vivo inhibition of C. difficile.

Enhancing Recovery from Gut Microbiome Dysbiosis and Alleviating DSS-Induced Colitis in Mice with a Consortium of Rare Short-Chain Fatty Acid-Producing Bacteria

A mutant fitness compendium in Bifidobacteria reveals molecular determinants of colonization and host-microbe interactions

The paper creates a mutant fitness compendium for Bifidobacterium breve to identify molecular factors affecting colonization and host-microbe interactions.

Identification of a microbial sub-community from the feral chicken gut that reduces Salmonella colonization and improves gut health in a gnotobiotic chicken model.

The paper identifies a bacterial blend from feral chicken gut microbiota that inhibits Salmonella colonization and improves gut health in chicken models.

Rice Bran and Quercetin Produce a Positive Synergistic Effect on Human Gut Microbiota, Elevate the Level of Propionate, and Reduce the Population of Enterobacteriaceae family when Determined using a Bioreactor Model.

A model screening pipeline for bile acid converting anti-Clostridioides difficile bacteria reveals unique biotherapeutic potential of Peptacetobacter hiranonis

The paper develops a screening pipeline to identify bile acid converting bacteria with anti-C. difficile properties, isolating Peptacetobacter hiranonis with unique biotherapeutic potential.

Analysis of 56K genomes identifies the relationship between antibiotic and metal resistance co-Occurrence and the spread of multidrug-resistant non-typhoidal Salmonella

The paper analyzes 56K genomes of Salmonella enterica to identify co-occurrence patterns of metal and antibiotic resistance genes, finding a specific group associated with multidrug resistance.

Global population genomic analysis of Mycoplasma bovis isolates reveals transcontinental variations and potential virulence genes

This study analyzes the global genomic diversity of Mycoplasma bovis isolates to identify transcontinental transmission patterns and potential virulence genes.

Description of Ruminococcus catenae SW178 sp. nov., a new anaerobic species isolated from feral chicken

The paper describes a new anaerobic bacterial species, Ruminococcus catenae, isolated from feral chickens and classified based on phylogenetic and phenotypic analysis.

Identifying Clostridioides difficile-inhibiting gut commensals using culturomics, phenotyping, and combinatorial community assembly

The paper identifies gut commensals that inhibit C. difficile using culturomics, phenotyping, and combinatorial community assembly, showing that species composition and mix size affect inhibition.

The Gut Microbiota composition of Feral and Tamworth Pigs determined using High-Throughput Culturomics and Metagenomics Reveals Compositional Variations When Compared to the Commercial Breeds

This study compares the gut microbiota of feral and Tamworth pigs to commercial breeds using metagenomics and culturomics, revealing compositional differences and antibiotic resistance gene variation.

Description of a new member of the family Erysipelotrichaceae: Clostridium fusiformis sp. nov., isolated from healthy human feces

The paper describes a new bacterial species, Clostridium fusiformis, isolated from human feces and characterized through polyphasic analysis.

Sellimonas caecigallum sp. nov., description and genome sequence of a new member of the Sellimonas genus isolated from the cecum of feral chicken

The paper describes a new bacterial species, Sellimonas caecigallum, isolated from feral chicken cecum, based on genomic and physiological analysis.

Olsenella lakotia SW165 sp. nov., an acetate producing obligate anaerobe with a GC rich genome

The paper describes the isolation and characterization of a novel Olsenella species, Olsenella lakotia, from feral chickens, highlighting its unique genomic and metabolic features.

Gut Microbial succession during conventionalization of germfree chicken

This study tracks gut microbial succession in germfree chicks inoculated with feral chicken microbiota, showing stable phylogenetic diversity and metabolic function over time.

Genome sequence and description of Blautia brookingsii str SG772 nov., a new species of anaerobic bacterium isolated from healthy human gut

The paper describes a new Blautia species, Blautia brookingsii, isolated from the human gut, based on genomic and phenotypic analyses showing significant genomic and functional differences from related species.

Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife

This study sequenced whole genomes of non-typhoidal Salmonella enterica isolates from wildlife to identify antimicrobial resistance and virulence genes.

Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle

This study examines how antibiotic feed additives affect the gut microbiome and antibiotic resistome of feedlot cattle using metagenomic sequencing.