Author

M. Duffy

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Ecology· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:plant (other)· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

A. Jex· 1 shared A. Lerch· 1 shared A. Magnante· 1 shared A. Thadi· 1 shared B. Ansell· 1 shared B. Xiong· 1 shared C. Caceres· 1 shared C. Chen· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperMicrobiology

A. Jex

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Mapping the Cellular Biogeography of Human Bone Marrow Niches Using Single-Cell Transcriptomics and Proteomic Imaging

S. Bandyopadhyay, M. Duffy, K. J. Ahn, M. Pang, D. Smith, G. Duncan, J. Sussman, J. Zhang, J. Huang, Y. L. Lin, B. Xiong, T. Imtiaz, C.-h. Chen, A. Thadi, C. Chen, , K. Tan

This study maps human bone marrow niches using single-cell transcriptomics and proteomic imaging, identifying distinct cellular environments and their roles in hematopoiesis and AML.

bioRxiv · Mar 14, 2024 · PreprintCell Biology

A scalable method for identifying recombinants from unaligned sequences

Q. Feng, K. Tiedje, S. Ruybal-Pesantez, G. Tonkin-Hill, M. Duffy, K. Day, H. Shim, Y.-b. Chan

This paper introduces a scalable method to identify recombinant sequences from unaligned data, demonstrating its effectiveness on malaria parasite var genes.

bioRxiv · Nov 18, 2020Evolutionary Biology

Can hot temperatures limit disease transmission? A test of mechanisms in a zooplankton-fungus system

M. Shocket, A. Magnante, M. Duffy, C. Caceres, S. Hall

The paper tests how high temperatures affect disease transmission in a zooplankton-fungus system, finding that while hot temperatures constrain transmission, they do not fully explain the absence of summer epidemics.

bioRxiv · Jun 25, 2019Ecology

Transcriptome and histone epigenome of Plasmodium vivax salivary-gland sporozoites point to tight regulatory control and potential mechanisms for liver-stage differentiation.

A. Jex, I. Mueller, S. Kappe, S. Mikolajcjak, J. Sattabongkot, R. Patrapuvich, S. Lindner, E. Flannery, C. Koepfli, B. Ansell, A. Lerch, K. E. Swearingen, S. J. Emery-Corbin, S. Charnaud, J. Smith, , V. Chuenchob

This study characterizes the transcriptome and histone epigenome of Plasmodium vivax sporozoites, revealing transcriptional and post-transcriptional control mechanisms and potential pathways for hypnozoite formation.

bioRxiv · Dec 3, 2018 · PreprintMicrobiology