Author

Y. Nishida

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 2 Cancer Biology· 1 Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

I. Yazawa· 2 shared S. Yamazaki· 2 shared Y. Shintani· 2 shared A. Al-Ibraheemi· 1 shared A. Buckley· 1 shared A. C. Hirbe· 1 shared A. Chatzipli· 1 shared A. E. Frazier· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersCell Biology

I. Yazawa

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Boosting biodiversity monitoring using smartphone-driven, rapidly accumulating community-sourced data

K. Atsumi, Y. Nishida, M. Ushio, H. Nishi, T. Genroku, S. Fujiki

The paper evaluates Biome app data quality and shows combining it with traditional surveys improves species distribution model accuracy for conservation.

bioRxiv · Sep 13, 2023Ecology

Atf3 controls transitioning in female mitochondrial cardiomyopathy as identified by single-cell transcriptomics

T. Qaqorh, Y. Takahashi, K. Otani, I. Yazawa, Y. Nishida, Y. Fujihara, M. Honda, S. Oki, Y. Ohkawa, D. R. Thorburn, A. E. Frazier, A. Takeda, Y. Ikeda, H. Sakaguchi, T. Watanabe, , Y. Shintani

This study identifies Atf3 as a key regulator of transition from compensation to dysfunction in female mitochondrial cardiomyopathy using single-cell transcriptomics.

bioRxiv · Sep 11, 2023Cell Biology

Genomic patterns of malignant peripheral nerve sheath tumour (MPNST) evolution correlate with clinical outcome and are detectable in cell-free DNA

I. Cortes-Ciriano, C. D. Steele, K. G. Piculell, A. Al-Ibraheemi, V. Eulo, M. M. Bui, A. Chatzipli, B. C. Dickson, D. C. Borcherding, A. Feber, A. Galor, J. Hart, K. B. Jones, J. T. Jordan, R. H. Kim, , D. T. Miller

This study identifies genomic patterns in MPNST evolution linked to clinical outcomes and shows these patterns are detectable in cell-free DNA.

bioRxiv · May 3, 2022 · PreprintCancer Biology

Pilot study: Trehalose-induced remodelling of the human microbiota affects Clostridioides difficile infection outcome in an in vitro colonic model

A. Buckley, I. Moura, N. Arai, W. Spittal, E. Clark, Y. Nishida, H. Harris, K. Bentley, G. DAVIS, D. Wang, S. Mitra, T. Higashiyama, M. H. Wilcox

This study shows that trehalose supplementation remodels the human gut microbiota, preventing simulated Clostridioides difficile infection in an in vitro model.

bioRxiv · Feb 16, 2021Microbiology

AMPK regulates cell shape of cardiomyocytes by modulating turnover of microtubules through CLIP-170

Y. Shintani, S. Yashirogi, T. Katayama, T. Nagao, Y. Nishida, H. Kioka, T. S. Matsui, S. Saito, Y. Masumura, O. Tsukamoto, H. Kato, I. Yazawa, H. Ueda, O. Tsukamoto, K. Yashiro, , S. Takeshima

This study shows AMPK regulates cardiomyocyte shape by modulating microtubule turnover via CLIP-170 phosphorylation at intercalated discs.

bioRxiv · May 29, 2020Cell Biology