Discover, rate, and discuss biology preprints.
363,000+ bioRxiv and medRxiv preprints, including those later published in peer-reviewed journals, across 26 biological disciplines.
Recent preprints
- PathologybioRxivPreprintDOI 10.1101/2021.07.08.451616
- PathologybioRxiv
Breast invasive ductal carcinoma classification on whole slide images with weakly-supervised and transfer learning
The paper develops a model to classify invasive ductal carcinoma on whole slide images using transfer learning and weakly-supervised learning, achieving ROC AUCs of 0.95-0.98 on test sets.
- PathologybioRxiv
Atherosis of trophoblast type: A specific form of decidual vasculopathy distinct from atherosis of macrophage type
The paper classifies decidual vasculopathy into types, finding atherosis of trophoblast type is distinct and linked to lower placental weight but not specific clinical features.
DOI 10.5858/arpa.2021-0356-oa - PathologybioRxiv✦ In-depth digest
Using Progressive Context Encoders for Anomaly Detection in Digital Pathology Images
R. Gillard, Q. Gu, C. Meroueh…·S. N. Hart
A progressive context encoder trained only on normal skin whole slide images flags melanoma regions without manual tumor labels, reaching 89% pixel-level accuracy across 9 test slides.
- PathologyCell ReportsPeer-reviewed
Compensatory hepatic adaptation accompanies permanent absence of intrahepatic biliary network due to YAP1 loss in liver progenitors
L. M. Molina, J. Zhu, Q. Li…·S. P. Monga
This study shows YAP1 is essential for bile duct development and reveals hepatocyte adaptation in its absence.
- PathologyPharmacological ResearchPeer-reviewed
Repurposing Nintedanib for Pathological Cardiac Remodeling and Dysfunction
P. Umbarkar, A. P. Singh, S. Tousif…·H. Lal
This study shows that Nintedanib prevents cardiac fibrosis and dysfunction in a mouse model of heart failure, even after treatment interruption.
DOI 10.1016/j.phrs.2021.105605 - PathologybioRxivPreprint
Small Vessel Diseases: 3D Characteristics of the Vasculature and White Matter
R. Saito, K. Tainaka, H. Nozaki…·A. Kakita
This study examines 2D and 3D vascular and white matter changes in CADASIL, HTRA1-AD, and sSVD using light-sheet fluorescence microscopy, revealing distinct patterns of degeneration.
- PathologybioRxivPreprint
Multiple levels of triggered factors and positive effect of cell-to-cell bottleneck in mutation repair of RNA viruses
S. Liu, C. Yu, G. Geng…·X. Yuan
This study identifies multiple triggering factors for mutation repair in RNA viruses and shows that cell-to-cell movement enhances mutation repair, opposing the Muller ratchet effect.
DOI 10.1101/2021.06.28.450159 - PathologybioRxivPreprint
Plant lipid metabolism in susceptible and tolerant soybean (Glycine max) cultivars in response to Phytophthora sojae colonization and infection
O. A. Adigun, T. H. Pham, D. Grapov…·R. Thomas
This study investigates lipid metabolism changes in soybean cultivars resistant and susceptible to Phytophthora sojae, identifying lipid biomarkers that may aid in developing plant protection strategies.
DOI 10.1101/2021.06.28.450227 - PathologyMolecular OncologyPeer-reviewed
Molecular diagnosis and prognosis of cancers of unknown-primary (CUPs): progress from a microRNA-based droplet digital PCR assay
N. Laprovitera, M. Riefolo, E. Porcellini…·M. Ferracin
This study uses a microRNA-based droplet digital PCR assay to identify the tissue-of-origin and predict prognosis in cancers of unknown primary (CUPs).
DOI 10.1002/1878-0261.13026 - PathologybioRxivPreprint
Dissemination and progression of pulmonary Mycobacterium avium infection in mouse model are associated with type 2 macrophage activation
R. Rosenbloom, I. Gavrish, K. Seidel…·N. A. Crossland
This study shows that B6.Sst1S mice develop more severe pulmonary M. avium infection with increased type 2 macrophage activation and reduced T cell density compared to wild-type mice.
- PathologybioRxivPreprint
Selectively expressing SARS-CoV-2 Spike protein S1 subunit in cardiomyocytes induces cardiac hypertrophy in mice.
S. G. Negron, C. W. Kessinger, B. Xu…·Z. Lin
This study shows that expressing SARS-CoV-2 Spike S1 subunit in cardiomyocytes causes cardiac hypertrophy and inflammation via TLR4 activation, independent of ACE2.
DOI 10.1101/2021.06.20.448993 - PathologyPLOS ONEPeer-reviewed
APOL1 is not expressed in proximal tubules and is not filtered
N. A. Blessing, Z. Wu, S. Madhavan…·L. A. Bruggeman
The study examines APOL1 expression in the kidney using transgenic mice and finds it is not expressed in proximal tubules or filtered by them.
DOI 10.1371/journal.pone.0253197 - PathologybioRxiv
EPAC1 Inhibition Protects the Heart from Doxorubicin-Induced Toxicity
M. Mazevet, A. Belhadef, M. Ribeiro…·E. Morel
This study shows that inhibiting EPAC1 protects the heart from doxorubicin-induced toxicity without affecting its cancer-killing effects.
DOI 10.7554/elife.83831 - PathologybioRxivPreprint
SARS-CoV-2 envelope-protein corruption of homeostatic signaling mechanisms in mammalian cells
T. Schulze, A. Hartel, S. Hoeler…·O. Rauh
This study shows that SARS-CoV-2 envelope protein disrupts cellular homeostasis by forming ion channels, leading to altered Ca2+ and pH levels and membrane depolarization.
DOI 10.1101/2021.06.16.448640 - PathologybioRxiv
Sirtuin 5 levels are limiting in preserving cardiac function and suppressing fibrosis in response to pressure overload
A. H. Guo, R. K. Baliira, M. E. Skinner…·D. B. Lombard
This study shows that overexpressing SIRT5 protects against cardiac dysfunction and fibrosis in response to pressure overload in mice.
DOI 10.1038/s41598-022-16506-7 - PathologybioRxiv
RASSF1A independence and early Galectin-1 upregulation in PIK3CA induced hepatocarcinogenesis: new therapeutic venues
A. Scheiter, K. Evert, L. Reibenspies…·K. Utpatel
This study shows that PIK3CA mutations drive hepatocarcinogenesis independently of RASSF1A status, with early Galectin-1 upregulation and synergistic therapeutic effects of PIK3CA and Galectin-1 inhibitors.
DOI 10.1002/1878-0261.13135 - PathologybioRxivPreprint
Deep learning-based segmentation and quantification of podocyte foot process morphology
L. Butt, D. Unnersjoe-Jess, M. Hoehne…·T. Benzing
This paper develops a deep learning method to segment and quantify podocyte foot process morphology in kidney tissue, confirming morphological changes in disease states.
- PathologybioRxiv
Stx2 Induces Differential Gene Expression by Activating Several Pathways and Disturbs Circadian Rhythm Genes in the Proximal Tubule.
F. Obata, R. Ozuru, T. Tsuji…·J. Fujii
This study identifies Stx2-induced differential gene expression and circadian rhythm disruption in proximal tubules, linking these changes to renal dysfunction.